PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g15050.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SRS
Protein Properties Length: 110aa    MW: 11878.2 Da    PI: 5.4638
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g15050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70267.44.7e-21243113154
           DUF702 113 avfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      a+frcv+v+svdd+ +e+aYqt+v+igGhvf+GiLydqG+e+
  Vradi05g15050.1   2 AMFRCVQVRSVDDAVNEIAYQTSVNIGGHVFSGILYDQGPEQ 43 
                      99**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.8E-17242IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016242.0E-19241IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MAMFRCVQVR SVDDAVNEIA YQTSVNIGGH VFSGILYDQG PEQSYNINKG ESSTALVDEH  60
QNASIHSRDS SGVTIASAGH ADPLFPPPPY PFPLASFRPG MPYFTYPRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g15050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150353e-87AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022636035.13e-76protein SHI RELATED SEQUENCE 3-like isoform X1
RefseqXP_022636036.14e-76protein SHI RELATED SEQUENCE 3-like isoform X2
TrEMBLA0A3Q0EWA67e-75A0A3Q0EWA6_VIGRR; protein SHI RELATED SEQUENCE 3-like isoform X1
TrEMBLA0A3Q0EXZ99e-75A0A3Q0EXZ9_VIGRR; protein SHI RELATED SEQUENCE 3-like isoform X2
STRINGXP_007135936.13e-50(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2269234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-16SHI-related sequence 5