PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g14650.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 350aa    MW: 39168.2 Da    PI: 6.8387
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g14650.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM143.41.2e-44221481121
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                      lppGfrFhPtdeel+++yL+ kv +  +++   ++evd++++ePw+Lp        +k +e+ewy Fs rd+ky+tg r+nrat +gyWkatgk
  Vradi05g14650.1  22 LPPGFRFHPTDEELITFYLASKVFNGCFTT-VKFAEVDLNRCEPWELPGgcyeadVAKMGEREWYMFSLRDRKYPTGLRTNRATGAGYWKATGK 114
                      79*************************988.55***************54677765555899******************************** PP

              NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdW 121
                      dkev+s+ +g+l g+kktLvfykgrap+gekt+W
  Vradi05g14650.1 115 DKEVFSAsSGTLLGMKKTLVFYKGRAPRGEKTKW 148
                      *****9977888********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5017159IPR003441NAC domain
PROSITE profilePS5100543.43522171IPR003441NAC domain
PfamPF023657.3E-2123148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MLAMEEVLCE LSDHEKRNEQ GLPPGFRFHP TDEELITFYL ASKVFNGCFT TVKFAEVDLN  60
RCEPWELPGG CYEADVAKMG EREWYMFSLR DRKYPTGLRT NRATGAGYWK ATGKDKEVFS  120
ASSGTLLGMK KTLVFYKGRA PRGEKTKWEE WVICRIFHKS GEKRTSLLQN QGQGHSDASS  180
SPTKTSLPPL LPSSTSFPLE LEDQNHLSHS HPYLFPFHAS PQLTNTRNHP SFSDLFFKPP  240
PLSQQQNCTL KAKEKTAPKV IKTEEATALY QYHLLGDTDN LRLNQNLSNF PNPFADVEVD  300
GAELMAFAGG PNGEVGDMSH STAFKRVGLQ QLIDAAHIGI DSWPLAQHV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-411916212171Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g14650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014502001.10.0protein CUP-SHAPED COTYLEDON 3
RefseqXP_022636774.10.0protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A1S3U7M00.0A0A1S3U7M0_VIGRR; protein CUP-SHAPED COTYLEDON 3
STRINGXP_007135979.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.13e-84NAC family protein