PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g12900.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 380aa    MW: 41937.1 Da    PI: 9.9598
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g12900.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.63e-18213255347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++++Ede ++ a+ q+G++ W+tIar ++ gRt++ +k++w++ 
  Vradi05g12900.1 213 PFSPQEDETIIAAHSQYGNR-WATIARLLP-GRTDNAVKNHWNST 255
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015707.8E-5061186IPR006460Protein of unknown function DUF617, plant
PfamPF047594.7E-4862186IPR006460Protein of unknown function DUF617, plant
PROSITE profilePS500904.658178205IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.3E-10186218IPR009057Homeodomain-like
SuperFamilySSF466892.99E-24186261IPR009057Homeodomain-like
PROSITE profilePS5129425.749206260IPR017930Myb domain
SMARTSM007176.2E-16210258IPR001005SANT/Myb domain
PfamPF002496.8E-15213255IPR001005SANT/Myb domain
CDDcd001671.05E-12213256No hitNo description
Gene3DG3DSA:1.10.10.602.5E-20219257IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MENPALASLL RHTTGESKRS SKFSSGGGLL KMFKLFPMLT SGCKMVALLG RPRKMLKDSA  60
TTGTIFGYRK GRVSLAIQED TRQMPIFLIE LPMLASALNK EMASDIMRIA LESETKSSRK  120
KLMEEFVWAV YCNGRKVGYS IRRKQMSDDE LHVMQHLRGV SMGAGVLPTA SDHKDSDGEM  180
TYMRASRYIK GRSGKSCRLR WCNQLSPTVQ HRPFSPQEDE TIIAAHSQYG NRWATIARLL  240
PGRTDNAVKN HWNSTLKRRA KAFLDINVNN ANNEGATSSA PSRSFEDDPL TALTLAPPGL  300
SSAAVAEDTV LDHRVSGERA IFNSPLRVVS ACTPTLGVSD QNGSGLCPLC HGRKHKEDKY  360
TLCQHSSAAE IHVLFCGWY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2617825926107B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g12900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.15e-40myb domain protein 77