PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g12490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 27560.1 Da PI: 10.211 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.8 | 3e-19 | 5 | 50 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+ +G+++W+++++ ++ gR++k+c++rw + Vradi05g12490.1 5 KGPWSPEEDEALRKLVQTYGPRNWSLVSKSIP-GRSGKSCRLRWCNQ 50 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 58.4 | 1.6e-18 | 57 | 101 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+eEde + +a++++G++ W+tIar ++ gRt++++k++w++ Vradi05g12490.1 57 RRPFTAEEDEMIMKAHARFGNK-WATIARLLN-GRTDNSIKNHWNST 101 679*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.379 | 1 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.86E-33 | 2 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-17 | 4 | 53 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-19 | 5 | 50 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-27 | 6 | 58 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.22E-16 | 7 | 49 | No hit | No description |
SMART | SM00717 | 2.4E-15 | 56 | 104 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.502 | 56 | 106 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.1E-15 | 57 | 101 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 59 | 105 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.54E-12 | 59 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MDRIKGPWSP EEDEALRKLV QTYGPRNWSL VSKSIPGRSG KSCRLRWCNQ LSPEVQRRPF 60 TAEEDEMIMK AHARFGNKWA TIARLLNGRT DNSIKNHWNS TLKRKCSEPP SDPRPPKRVA 120 TGSDSPSGSD LSDSGLPATT PIPLYEALAG SVSVKLGATA SSSGNDIATS LSLSLPGPKN 180 GPGAGPVMKE KPRNGDSEQL WSKELLKVMQ DMIRVEVWNY MSGLERREVF TQTDGIRNSE 240 RSNTLRERG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-42 | 4 | 106 | 3 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-42 | 4 | 106 | 3 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-42 | 4 | 106 | 3 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (PubMed:23067202, PubMed:23603962). Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA (PubMed:18162593, PubMed:9678577). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB44 is enhanced by direct interaction between MYB44 and PYL8 (PubMed:24894996). Transcriptional activator of WRKY70 by direct binding to its promoter region, especially at 5'-TAACNG-3' and 5'-CNGTTA-3' symmetric motifs (PubMed:23067202, PubMed:23603962). Activates salicylic acid (SA)- mediated defenses and subsequent resistance to biotrophic pathogen P.syringae pv. tomato DC3000, but represses jasmonic acid (JA)-mediated defenses responses against the necrotrophic pathogen A.brassicicola (PubMed:23067202). {ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202, ECO:0000269|PubMed:23603962, ECO:0000269|PubMed:24894996, ECO:0000269|PubMed:9678577}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g12490.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought, cold, high salinity, cadmium (CdCl(2)), salicylic acid (SA), jasmonate (JA), ethylene, gibberellic acid (GA), and ABA (PubMed:16463103, PubMed:18162593, PubMed:23067202). The induction by JA is COI1-dependent (PubMed:23067202). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031188 | 1e-125 | KT031188.1 Glycine max clone HN_CCL_41 MYB/HD-like transcription factor (Glyma04g04490.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014500397.1 | 0.0 | transcription factor MYB44 | ||||
Swissprot | Q9FDW1 | 7e-71 | MYB44_ARATH; Transcription factor MYB44 | ||||
TrEMBL | A0A1S3U300 | 0.0 | A0A1S3U300_VIGRR; transcription factor MYB44 | ||||
STRING | XP_007136715.1 | 1e-121 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF843 | 34 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 4e-69 | myb domain protein 73 |