PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g11910.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 260aa    MW: 28819.2 Da    PI: 8.0679
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g11910.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.65.7e-1082102526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C+++++ G Ck+Gd+C+FaHg
  Vradi05g11910.1  82 ACPDYRK-GNCKRGDTCQFAHG 102
                      7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.46E-576106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.94377104IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-877103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-778104IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-881102IPR000571Zinc finger, CCCH-type
SMARTSM0035641112135IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MTPNVQIPLW DSAAADGGPV SPFSPNAPDT VSFSTDHFRM FHFKVLTCPR GRAHDWTECP  60
YAHPAEKARR RDPRKFLYSA TACPDYRKGN CKRGDTCQFA HGVFECWLHP SRYRTHLCKD  120
GTNCRRRVCF FAHTNDQLRL APDSSSLSSP TSVITSSFFD SPPSSSYVHN IQEIVSSMRN  180
VQLEDGLFSG LTRCVFGSTS GGILSGNGCE EEEPAMERVE SGRDIRARIY AKLSRENSFA  240
GSAPHVGWVS EQVNGFRGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g11910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014499983.10.0zinc finger CCCH domain-containing protein 23
SwissprotO821991e-74C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A1S3U1S30.0A0A1S3U1S3_VIGRR; zinc finger CCCH domain-containing protein 23
STRINGXP_007136803.11e-142(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.22e-73C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]