PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g11580.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 163aa    MW: 18564.4 Da    PI: 5.3545
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g11580.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.81e-23115160146
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTT CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpk 46 
                      +dDg++WrKYG+K+vk+s++pr+YYrC+ +gC+vkk ver+++dp+
  Vradi05g11580.1 115 MDDGFKWRKYGKKMVKNSPNPRNYYRCSVEGCSVKKVVERDKDDPS 160
                      59****************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-25102160IPR003657WRKY domain
SuperFamilySSF1182901.7E-21108160IPR003657WRKY domain
PROSITE profilePS5081123.204110162IPR003657WRKY domain
SMARTSM007743.2E-18115162IPR003657WRKY domain
PfamPF031068.2E-18116159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MCAVVHSFRI NGVKMSGDNP KAPDSPENDF TKQWPSELSE YLNLDDDPWS YDDLESFVSG  60
HAFSHKTEAN EVGELGGSST HHEEFSIRDD GINEHEKKEV RDRVAFKTKS EIEIMDDGFK  120
WRKYGKKMVK NSPNPRNYYR CSVEGCSVKK VVERDKDDPS GR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-18105159761Probable WRKY transcription factor 4
2lex_A5e-18105159761Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g11580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-113AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500793.11e-116probable WRKY transcription factor 50 isoform X1
SwissprotQ8VWQ55e-33WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A1S3U4371e-114A0A1S3U437_VIGRR; probable WRKY transcription factor 50 isoform X1
STRINGXP_007136862.14e-72(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-35WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]