PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g07840.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 625aa    MW: 67726.2 Da    PI: 8.6339
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g07840.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-09240285144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                      r+ W++eEd +l  av+++G g+W+t a+  +   +R++ q+  rw
  Vradi05g07840.1 240 RKTWSEEEDIQLRAAVQRWGEGNWATMAKGDNfpIKRSPTQLAQRW 285
                      789*************************987788669999999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.707235293IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.0E-11236290IPR009057Homeodomain-like
SuperFamilySSF466892.15E-10238291IPR009057Homeodomain-like
SMARTSM007177.5E-10239291IPR001005SANT/Myb domain
PfamPF002491.3E-8240285IPR001005SANT/Myb domain
CDDcd116605.41E-11241290No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MSEKKTRVSF TEKDAVALMQ RYDPTTVFIL LQEVAHYAKP KIDWSELVKK SATGISNVRE  60
YQMLWRHLAY RHSLPENFEV GAEPLDDDSD LECELEALPP VSVESASEAA ACVKIHQQHI  120
NIWVLCLMPL GKDMARITGS KVPVRAANKC GQVMIASRTL SDSAPSSSTI EAPLTINVPV  180
CHSSATLIES SQPSNLMQGT NIVFPVTVQR QTLPTHPVPP TDGIESKGLV GGNLASKRKR  240
KTWSEEEDIQ LRAAVQRWGE GNWATMAKGD NFPIKRSPTQ LAQRWSILRK KDGTVNSGTI  300
STSSQYTTAE QLATRHSLSL ALDMPFKKLT APGVSDPDGK ANPDPVKTSA SVKNQVQIRN  360
TVEKVASSFV PPQQPSRQAS LLGSDSHVKP KLVDEKLVSK GNIISNPVLK STTAAPGTRI  420
DSPSNTVSHF KIAPVKHNVD TKPAVSSLTK TSVSTNMPSD PKNKPATPLA DKVPLEQDAN  480
SMKEFRASDL SSRPKDQTQE NEPPKVTIES QVNSNLEKGR SDIGQAKIVP ISCGEESLKD  540
KASQDEKQPS ATKATAVVSE DQGSVKNATE NSNHDKGSLN SNQDKKTSIN ESSNNQKMND  600
KNVNLPVQDE GSQSAKVVKT DGEC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g07840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014498767.10.0uncharacterized protein LOC106759899
TrEMBLA0A1S3TYD10.0A0A1S3TYD1_VIGRR; uncharacterized protein LOC106759899
STRINGXP_007136328.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.15e-30MYB_related family protein