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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Vradi05g06870.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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| Family |
GRAS |
| Protein Properties |
Length: 504aa MW: 55483.9 Da PI: 6.0663 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vradi05g06870.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 338.3 | 1.4e-103 | 109 | 495 | 1 | 374 |
GRAS 1 lvelLlecAeavss..gdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsv.......selykalppsetsekn....sseela 79
lv+lL+++Aea++ ++ la+ +L rl++l s++g++m+Rlaayft AL+ l + + ++ y ++ + + + + + ++la
Vradi05g06870.1 109 LVHLLMAAAEALTGatKSRDLARVILVRLKDLvsHSSHGSNMERLAAYFTDALQGLLEGAGgahnnskHHYYITCGSHHPR--DdhhhQNDTLA 200
68**********87336666************7778999*****************9763211111103333333333333..23467999*** PP
GRAS 80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfA 169
a++l++++sP++kf+h+taNqaIleav++e+rvHi+D+di++G+QW++L+qaLas + gpp +lRiT++++ +g s +++etg+rL+ fA
Vradi05g06870.1 201 AFQLLQDMSPYVKFGHFTANQAILEAVAHERRVHIVDYDIMEGVQWASLMQALASDKTGPPgpHLRITALSRTGTGrrSIASVQETGRRLTAFA 294
******************************************************877665556*********888799999************* PP
GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
++lg pf f+ + e++++++L++ +gEal+ n++l+l +l + ++ + ++L+ k+l+P++v++ve+e+ + + F+ rf+++l++
Vradi05g06870.1 295 ASLGQPFTFHQCRLDPDETFKPSSLKLVRGEALVFNCMLNLPHLSYR---APDSIASFLSGAKELKPRLVTLVEEEVGSSVGGFVGRFMDSLHH 385
***********9999****************************9844...4444569************************************* PP
GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sg 356
ysa+fdslea++p + ++r+ vEr +lg++iv +a + e+ e+ ++W e+l++aGF+ vp+s + +qaklll ++ dgyrvee +
Vradi05g06870.1 386 YSAVFDSLEAGFPMQGRARALVERIFLGPRIVGSLARIYRT-GEELEERRSWGEWLGAAGFRGVPMSFANHCQAKLLLGLFN-DGYRVEELgTN 477
***************************************99.899999**********************************.******98689 PP
GRAS 357 slvlgWkdrpLvsvSaWr 374
lvl Wk+r+L+s+S W+
Vradi05g06870.1 478 KLVLDWKSRRLLSASLWT 495
999**************6 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 504 aa
Download sequence Send
to blast |
MEIDTNTDID AIHNLHFSGY TTITDTNPSS DDDYGCNWNH WSPLVNWDAF TGSHDDFHHL 60
IDSIVSDPPT EYPSPEDHAA SNSPSASITE EDDAEEETAA ADDSKGLRLV HLLMAAAEAL 120
TGATKSRDLA RVILVRLKDL VSHSSHGSNM ERLAAYFTDA LQGLLEGAGG AHNNSKHHYY 180
ITCGSHHPRD DHHHQNDTLA AFQLLQDMSP YVKFGHFTAN QAILEAVAHE RRVHIVDYDI 240
MEGVQWASLM QALASDKTGP PGPHLRITAL SRTGTGRRSI ASVQETGRRL TAFAASLGQP 300
FTFHQCRLDP DETFKPSSLK LVRGEALVFN CMLNLPHLSY RAPDSIASFL SGAKELKPRL 360
VTLVEEEVGS SVGGFVGRFM DSLHHYSAVF DSLEAGFPMQ GRARALVERI FLGPRIVGSL 420
ARIYRTGEEL EERRSWGEWL GAAGFRGVPM SFANHCQAKL LLGLFNDGYR VEELGTNKLV 480
LDWKSRRLLS ASLWTSSSSS DSH*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
