PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g05750.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 488aa    MW: 54971.6 Da    PI: 6.551
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g05750.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.13.2e-1354144199
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                      ffk  t+ d+l++  l++p  f   +  +++   +k++ l+d++g++W+vk+  +   g++ +++GW+ F + +gLk+g  +v+ ++++  f  
  Vradi05g05750.1  54 FFKFITRQDYLTT--LCIPPAFS-GIvaSMV---NKKINLNDSTGQQWKVKV--SEVNGSFAFGEGWSLFSSGHGLKVGYLLVLNYIKDLHF-- 137
                      7888888888887..89****97.5544333...468***************..888899**************************987666.. PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                       vk++++
  Vradi05g05750.1 138 DVKIYDT 144
                      8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1748147IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-1748147IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.32152145IPR003340B3 DNA binding domain
CDDcd100173.67E-1253143No hitNo description
SMARTSM010193.1E-654145IPR003340B3 DNA binding domain
PfamPF023621.3E-1054143IPR003340B3 DNA binding domain
CDDcd100175.67E-7383466No hitNo description
SMARTSM010191387482IPR003340B3 DNA binding domain
SuperFamilySSF1019368.44E-10413467IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-9414484IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.023421487IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MGAPDLSHHV FEEGHLIEKR GKMGGEEHGV SVCAACTHNC LLFHQTKQTS PTSFFKFITR  60
QDYLTTLCIP PAFSGIVASM VNKKINLNDS TGQQWKVKVS EVNGSFAFGE GWSLFSSGHG  120
LKVGYLLVLN YIKDLHFDVK IYDTSACEKL GLPRKRNQKK RSRSKIGSPV RDSILVRQEL  180
DAPRQCSKFD LVVPQKAKEN GQDVLILDHS EEDPCHSKSL EFDQSHGDDG TMKSQNGDLI  240
VSNVDYESNI VENDAMIRSK NTMLEGVLST EVALDISEPL EADTYTYDKT LDSKIEENKA  300
ILSNREAQEC QFSKGLGEMK KLPVDMNPNL GSSMDEFHLT GEVSKKLKKE LVTLNEMEAT  360
GLPKEINGLL DSDIFNEDNA SHFKTTHVSC VVPHDNVFLE LPSCLPLIRK VKVDQQRKML  420
VFLRDPLRRL WPVYYHEKPH LKLLAHGWLD FSRANNIQPK DECIFETEVD PECKSKRILS  480
VQIVHNK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g05750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500538.10.0B3 domain-containing protein Os01g0905400 isoform X1
TrEMBLA0A1S3U3D60.0A0A1S3U3D6_VIGRR; B3 domain-containing protein Os01g0905400 isoform X1
STRINGXP_007137956.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.18e-13B3 family protein