PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g05170.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 287aa    MW: 32879.7 Da    PI: 6.1829
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g05170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.91.3e-25124184259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dD ++WrKYGqK++ +s+fprsY+rCt +   gC+++k+v+r +e+p++ +itY g H+++
  Vradi05g05170.1 124 DDNHAWRKYGQKDILNSQFPRSYFRCTRKfeqGCKATKQVQRLEENPDMYNITYIGFHTCK 184
                      8**************************98889***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-25113184IPR003657WRKY domain
SuperFamilySSF1182904.97E-24120184IPR003657WRKY domain
SMARTSM007747.2E-36123185IPR003657WRKY domain
PfamPF031062.2E-24124184IPR003657WRKY domain
PROSITE profilePS5081118.785124181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MNKTLVTELL LGLDYATQLK FLLQKPVDPD ASVAAKELVT NVHRSFAQTL SILTSSHPAR  60
VQDQVAQNLL ISGEDASQAA SIDHRSHDST ESRKRSFPLS KDRRGSYKRR KTEQTWTIVS  120
HTTDDNHAWR KYGQKDILNS QFPRSYFRCT RKFEQGCKAT KQVQRLEENP DMYNITYIGF  180
HTCKDILKAP QMVTCSETWD SFLENSHEDF NVPNEQKQHD PPMRSQSPIV KQECLNDETD  240
PSDLTDANLW SELKDFELSN EKPALKISSE NADAFMYLLS EFGHEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-22117184269OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192110RKRSFPLSKDRRGSYKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g05170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500012.10.0LOW QUALITY PROTEIN: probable WRKY transcription factor 70
TrEMBLA0A1S3U1X40.0A0A1S3U1X4_VIGRR; LOW QUALITY PROTEIN: probable WRKY transcription factor 70
STRINGXP_007136415.11e-176(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-49WRKY DNA-binding protein 70