PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g04860.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 328aa    MW: 36692.5 Da    PI: 6.929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g04860.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.58.5e-07109155555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       n   + RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Vradi05g04860.1 109 SNTQSKVRREKISERMKVLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 155
                      5778899******************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.179104154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-13106171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-6110160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12113169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.32E-7114159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAGFSYQYHP FLVDPAFFPS NMNTTSSPPP PQFHLSQETS FNVTNQETSC VDQSSKISIS  60
DNEPSVTKNL SPQSSVVVDK LETGEQVTQK VNTPAFKKRR TRNGSSLTSN TQSKVRREKI  120
SERMKVLQRL VPGCDKVTGK ALMLDEIINY VQSLQNQVEF LSMKLASVNP MFYDLSTDLD  180
TLLVRPDKLN SMASPSPLPC VSHCNSPNQA TTFADTTTMT PTNIFHNASD YLLDNSASFF  240
LQGQRAQNTL CSTPYRSLHV AHTSRSIHVI GTPPRRLLVV VEDCELLVID LSRLEDRDET  300
VREECKSHIA SASQDWVFQI LFLTFRF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g04860.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311071e-168KT031107.1 Glycine max clone HN_CCL_82 bHLH transcription factor (Glyma06g17420.1) mRNA, partial cds.
GenBankKT0312511e-168KT031251.1 Glycine max clone HN_CCL_22 bHLH transcription factor (Glyma04g37690.1_like1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027902057.11e-134transcription factor bHLH137-like
TrEMBLA0A4D6NLR81e-133A0A4D6NLR8_VIGUN; Phytochrome-interacting factor 3
STRINGXP_007137888.11e-131(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-34bHLH family protein