PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0536s00010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 335aa    MW: 37742.1 Da    PI: 7.8045
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0536s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-13133184155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Vradi0536s00010.1 133 QRMTHIAVERNRRRQMNDHLSVLRSLMPPS---YIQRGDQASIIGGAIDFVKELE 184
                        79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.07E-13131188No hitNo description
PROSITE profilePS5088815.751132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-17132200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-13133198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-11133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10138189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MPFLQMLQSV ESPQFFPLKE PNFQTLLRLQ HIKKPWEGMT YVPRMEAQVQ AALELESCVT  60
HDMLEMQSPV KSESNELQHP LSFSCVEKVS YECNQEAHKV LQSCPKSQPA TTRERRKRKR  120
TRPSKNTEDV ENQRMTHIAV ERNRRRQMND HLSVLRSLMP PSYIQRGDQA SIIGGAIDFV  180
KELEQLLQSL EAQKRMRKNE EGGGSSSTVL CKPPSTPSSS SPHGYGMRSS TSEEVSCGDE  240
MKAENKSEAA DIKVTLIQTH VNLKIECQRK PGQLIKVIVA LEDLRLTILH LNITSSETSV  300
LYSLNLKIEE GCSLRSASDI AEAVHHIFNF INGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114119RRKRKR
2133144RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0536s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521637.10.0transcription factor bHLH57 isoform X2
RefseqXP_014521638.10.0transcription factor bHLH57 isoform X2
TrEMBLA0A1S3VTD10.0A0A1S3VTD1_VIGRR; transcription factor bHLH57 isoform X2
STRINGXP_007135328.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.19e-68bHLH family protein