PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g09530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 232aa MW: 25831.8 Da PI: 11.0881 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.1 | 1.1e-28 | 54 | 104 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ +qvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eyss Vradi04g09530.1 54 KRIENKTSQQVTFSKRRTGLLKKANEISVLCDAQVALIMFSTKGKLFEYSS 104 79***********************************************96 PP | |||||||
2 | K-box | 52.5 | 2.1e-18 | 104 | 158 | 33 | 87 |
K-box 33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 +e R++lG++L++LslkeLq+LeqqL++slk+iR++K + l eq ++l k++++ Vradi04g09530.1 104 SERRNFLGNGLDPLSLKELQSLEQQLDTSLKRIRTRKARTLQEQNSKLAKMKEKG 158 678*****************************************99987766654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.852 | 46 | 106 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-37 | 46 | 105 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.89E-34 | 47 | 104 | No hit | No description |
SuperFamily | SSF55455 | 4.19E-27 | 47 | 106 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-29 | 48 | 68 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-24 | 55 | 102 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-29 | 68 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-29 | 83 | 104 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 9.285 | 85 | 171 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.6E-14 | 102 | 156 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MGPTSSYGLS PNVKPCQHDT SLLFNSISTT HRTSSFPPIT TRQRIMGRGR VQLKRIENKT 60 SQQVTFSKRR TGLLKKANEI SVLCDAQVAL IMFSTKGKLF EYSSERRNFL GNGLDPLSLK 120 ELQSLEQQLD TSLKRIRTRK ARTLQEQNSK LAKMKEKGKT LTERPQSVPE TLGQNSTNLN 180 LASPQLLPPQ RLVPSLTLSG PLQGRATMEE MGEPQTVPTG HSLIPPWMLH I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-17 | 46 | 104 | 1 | 59 | MEF2C |
5f28_B | 1e-17 | 46 | 104 | 1 | 59 | MEF2C |
5f28_C | 1e-17 | 46 | 104 | 1 | 59 | MEF2C |
5f28_D | 1e-17 | 46 | 104 | 1 | 59 | MEF2C |
6byy_A | 8e-18 | 46 | 104 | 1 | 59 | MEF2 CHIMERA |
6byy_B | 8e-18 | 46 | 104 | 1 | 59 | MEF2 CHIMERA |
6byy_C | 8e-18 | 46 | 104 | 1 | 59 | MEF2 CHIMERA |
6byy_D | 8e-18 | 46 | 104 | 1 | 59 | MEF2 CHIMERA |
6bz1_A | 8e-18 | 46 | 104 | 1 | 59 | MEF2 CHIMERA |
6bz1_B | 8e-18 | 46 | 104 | 1 | 59 | MEF2 CHIMERA |
6bz1_C | 8e-18 | 46 | 104 | 1 | 59 | MEF2 CHIMERA |
6bz1_D | 8e-18 | 46 | 104 | 1 | 59 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g09530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 4e-94 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022635767.1 | 1e-119 | truncated transcription factor CAULIFLOWER A | ||||
Swissprot | D7SMN6 | 1e-49 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
TrEMBL | A0A3Q0F058 | 1e-117 | A0A3Q0F058_VIGRR; truncated transcription factor CAULIFLOWER A | ||||
STRING | XP_007139418.1 | 1e-100 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 3e-35 | AGAMOUS-like 8 |
Publications ? help Back to Top | |||
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