PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi04g08910.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 347aa MW: 39140.1 Da PI: 5.826

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi04g08910.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171	3.6e-53	17	142	2	129
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 p GfrFhPtdeel+++yL kkv+++ + + +i+evd++k+ePw+Lp+ +k +e+ewy+Fs rdkky+tg r+nrat++gyWkatgkdke+++ Vradi04g08910.1 17 PTGFRFHPTDEELIKDYLIKKVADNCFCA-VAIAEVDLNKCEPWNLPALAKMGETEWYYFSVRDKKYPTGLRANRATEAGYWKATGKDKEIIA- 108 89*********************9887.67***********8888899***********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++l+g kktLvfykgrap+gekt+Wvmheyrle Vradi04g08910.1 109 ENALIGRKKTLVFYKGRAPRGEKTNWVMHEYRLE 142 999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-60	13	163	IPR003441	NAC domain
PROSITE profile	PS51005	56.614	16	163	IPR003441	NAC domain
Pfam	PF02365	1.8E-26	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MENVYKPSKE NQKFNFPTGF RFHPTDEELI KDYLIKKVAD NCFCAVAIAE VDLNKCEPWN 60 LPALAKMGET EWYYFSVRDK KYPTGLRANR ATEAGYWKAT GKDKEIIAEN ALIGRKKTLV 120 FYKGRAPRGE KTNWVMHEYR LEGKQNQYQY AKGEWVVCRV FEKGPSGRKL NVRRLNSSGN 180 ESSSPSSLLP PLMDSSPNNS EARTTAGQLS QVTSRDPNYT VDQKNTHDGI VEIMETPILN 240 LSSSATPFAV YPFGKPTLSV PDQPAQIANQ IGNSQYPDYC YMPQEQSLKM LMTGNHEPNA 300 KQIQKTEFSD GRDFDADIDT MLENQEIDQL VQGMWTPIAC GITEEG*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MENVYKPSKE NQKFNFPTGF RFHPTDEELI KDYLIKKVAD NCFCAVAIAE VDLNKCEPWN  60
LPALAKMGET EWYYFSVRDK KYPTGLRANR ATEAGYWKAT GKDKEIIAEN ALIGRKKTLV  120
FYKGRAPRGE KTNWVMHEYR LEGKQNQYQY AKGEWVVCRV FEKGPSGRKL NVRRLNSSGN  180
ESSSPSSLLP PLMDSSPNNS EARTTAGQLS QVTSRDPNYT VDQKNTHDGI VEIMETPILN  240
LSSSATPFAV YPFGKPTLSV PDQPAQIANQ IGNSQYPDYC YMPQEQSLKM LMTGNHEPNA  300
KQIQKTEFSD GRDFDADIDT MLENQEIDQL VQGMWTPIAC GITEEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-51	13	169	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-51	13	169	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-51	13	169	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-51	13	169	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-51	13	169	17	174	NAC domain-containing protein 19
3swm_B	2e-51	13	169	17	174	NAC domain-containing protein 19
3swm_C	2e-51	13	169	17	174	NAC domain-containing protein 19
3swm_D	2e-51	13	169	17	174	NAC domain-containing protein 19
3swp_A	2e-51	13	169	17	174	NAC domain-containing protein 19
3swp_B	2e-51	13	169	17	174	NAC domain-containing protein 19
3swp_C	2e-51	13	169	17	174	NAC domain-containing protein 19
3swp_D	2e-51	13	169	17	174	NAC domain-containing protein 19
4dul_A	2e-51	13	169	14	171	NAC domain-containing protein 19
4dul_B	2e-51	13	169	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi04g08910.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014497505.1	0.0	NAC domain-containing protein 92
Refseq	XP_022635265.1	0.0	NAC domain-containing protein 92
Refseq	XP_022635266.1	0.0	NAC domain-containing protein 92
Swissprot	Q9FLJ2	7e-85	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1S3TUT0	0.0	A0A1S3TUT0_VIGRR; NAC domain-containing protein 92
STRING	XP_007139532.1	1e-179	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	6e-81	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]