PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g08720.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 318aa    MW: 35260.5 Da    PI: 8.3163
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g08720.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.2e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W+t++ + g+ R+ k+c++rw +yl
  Vradi04g08720.1 14 KGPWTPEEDIILVSYIQEHGPGNWRTVPTKTGLSRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding491.4e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++ ++++  +lG++ W++Ia++++  Rt++++k++w+++l
  Vradi04g08720.1  67 RGNFTEQEEKMIIHLQDLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-25564IPR009057Homeodomain-like
PROSITE profilePS5129426.138965IPR017930Myb domain
SuperFamilySSF466892.28E-3111108IPR009057Homeodomain-like
SMARTSM007175.3E-151363IPR001005SANT/Myb domain
PfamPF002492.0E-161461IPR001005SANT/Myb domain
CDDcd001676.20E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2465117IPR009057Homeodomain-like
PROSITE profilePS5129420.34566116IPR017930Myb domain
SMARTSM007174.0E-1566114IPR001005SANT/Myb domain
PfamPF002499.1E-1567112IPR001005SANT/Myb domain
CDDcd001671.55E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGRPPCCDKE GVKKGPWTPE EDIILVSYIQ EHGPGNWRTV PTKTGLSRCS KSCRLRWTNY  60
LRPGIKRGNF TEQEEKMIIH LQDLLGNRWA AIASYLPQRT DNDIKNYWNT HLRKKLKKLQ  120
TGCEGSLGDS FSGSRQIPRG QWERRLQTDI QMAKRALSEA LSPEKPSCLS GSNSNPSESS  180
SSFSSTKPSQ SLCYASSAEN IARMLKGWMK NPPKSSRTNS SVTQNSFNNL VAAGADTASS  240
GAKGPNSVEL SQNFESLFEF HQSFDSSNSD ELSQSFSPEE NKPDIGAEIM PFSLLEKWLL  300
DEAACQEKVG CADAKFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-271411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g08720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497102.10.0myb-related protein 306
SwissprotP813921e-110MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A1S3TTM20.0A0A1S3TTM2_VIGRR; myb-related protein 306
STRINGXP_007139579.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.11e-105myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]