PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g07690.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 268aa    MW: 28821.1 Da    PI: 7.2667
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g07690.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.41e-12129154227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ C+F+H++
  Vradi04g07690.1 129 DQPECQFYMKTGDCKFGAVCRFHHPR 154
                      689*********************96 PP
2zf-CCCH391.4e-12174200127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++lC f++r+G+Ck+G++CkF H++
  Vradi04g07690.1 174 PGEPLCVFYSRYGICKFGPSCKFDHPM 200
                      589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.624127155IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-5127154IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-9129154IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6130156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-5133155IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7173200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821173201IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9175200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6176200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4178198IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MVLSMRSSPV YPSVQSPTTP GQQSYATGIT NWPSSSYIPS PRWQSPSSYA PLILPQGMVS  60
VPGWSAYSGQ MGSDSSQQTM GNGQSYGTNR QSEPTNAGSQ GAYSQFRSGS VPVGFYALQR  120
ENIFPERPDQ PECQFYMKTG DCKFGAVCRF HHPRERMIPA PDCVLSPIGL PLRPGEPLCV  180
FYSRYGICKF GPSCKFDHPM GVFTYNISAS PSADAPGRRM LGSSSGTSAL NLSSEGLVES  240
GSANPRRLSL SETRQIPSGD DNIDEEG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g07690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418890.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_022635658.10.0zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF91e-168ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A0L9U2M20.0A0A0L9U2M2_PHAAN; Uncharacterized protein
TrEMBLA0A1S3TVL00.0A0A1S3TVL0_VIGRR; zinc finger CCCH domain-containing protein ZFN-like
STRINGXP_007139732.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.13e-84zinc finger protein 1