PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g04360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 132aa MW: 15479.2 Da PI: 6.0886 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29 | 2.5e-09 | 22 | 44 | 22 | 46 |
T-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46 + W++Ia+ ++ gRt++++k++w++ Vradi04g04360.1 22 R-WSKIAKQLP-GRTDNEIKNFWRT 44 5.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.94E-9 | 8 | 52 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.458 | 10 | 46 | IPR017877 | Myb-like domain |
CDD | cd00167 | 2.85E-7 | 14 | 44 | No hit | No description |
Pfam | PF00249 | 2.3E-7 | 21 | 44 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-11 | 22 | 46 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MEVGTLLHLW CSNERKLLLE FRWSKIAKQL PGRTDNEIKN FWRTRIQKHM KQSESFQQQS 60 NSERNDHQAF TSQVTTIAEP METYSPSCYQ GMLEPFSTQF HTNPDQSSCC TNDNNNYWSM 120 EDILSMQLAN Y* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g04360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-179 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014497598.1 | 9e-78 | myb-related protein 305-like | ||||
Swissprot | P81391 | 1e-21 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A1S3TUZ2 | 2e-76 | A0A1S3TUZ2_VIGRR; myb-related protein 305-like | ||||
STRING | XP_007140964.1 | 1e-71 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3305 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 9e-18 | myb domain protein 21 |
Publications ? help Back to Top | |||
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