PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g02990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TCP | ||||||||
Protein Properties | Length: 130aa MW: 14187.2 Da PI: 6.9435 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 101.6 | 1.3e-31 | 3 | 67 | 9 | 73 |
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++h kv+gRdRRvRlsa caar+F+L++eLG ++d++tieWLl +a+pai ++tgt+ ++ + Vradi04g02990.1 3 RDRHIKVNGRDRRVRLSAICAARIFQLTRELGKKTDGETIEWLLHKAEPAIVAATGTGIVPSITS 67 69*******************************************************77666333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 25.081 | 2 | 56 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.7E-27 | 2 | 71 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MKRDRHIKVN GRDRRVRLSA ICAARIFQLT RELGKKTDGE TIEWLLHKAE PAIVAATGTG 60 IVPSITSSVD SAATLMANTT TTLVPLDTIA AQDTNLVTIA AVARTEQPIP PFHFDFEWMQ 120 HSDLGFCDN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g02990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-164 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014496711.1 | 1e-92 | transcription factor TCP20-like | ||||
Swissprot | O64647 | 3e-29 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A1S3TSE8 | 3e-91 | A0A1S3TSE8_VIGRR; transcription factor TCP20-like | ||||
STRING | XP_007150170.1 | 8e-73 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3339 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 5e-31 | TCP family protein |