PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g02870.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 361aa    MW: 40075.4 Da    PI: 8.4868
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g02870.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.21.1e-18275308134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Vradi04g02870.1 275 CMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 308
                      99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-16269319IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.833269305IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-14270331No hitNo description
Gene3DG3DSA:3.30.50.101.4E-14273306IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.31E-14274321No hitNo description
PfamPF003201.6E-16275308IPR000679Zinc finger, GATA-type
PROSITE patternPS003440275300IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MKDSWFFDNN FNGLSDDIFD DVVGFFDFPL EDVEDDWDSQ FKCLEHQHSE VFSASSNGLC  60
AKTQTENPQF GTEFSVSVSI LSAVMVGQGL IPKEPLCMCN GPSPIPSLLS VYGPEVRTSW  120
LCDYVRIKCN GISPIKQLAT APGPTYGKTI PLKNVTFNGK DLHRFRTYSP VSVFESSSSS  180
SVENSSFDRP VIPVKRARSK RHRRISFSPL FSIPFVQALQ KQQRTSASES DFGTNVAGNM  240
SNKVKSHKKK DLSLLSEDVE IMRSSHLVSD PPRKCMHCEV TKTPQWREGP MGPKTLCNAC  300
GVRYRSGRLF PEYRPAASPT FVASLHSNCH KKVVEMRSRV QEGVRGSVFA SSNLHENSVG  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g02870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014498171.10.0GATA transcription factor 11 isoform X1
RefseqXP_014498172.10.0GATA transcription factor 11 isoform X2
TrEMBLA0A1S3TWL40.0A0A1S3TWL4_VIGRR; GATA transcription factor 11 isoform X1
TrEMBLA0A1S3TWN50.0A0A1S3TWN5_VIGRR; GATA transcription factor 11 isoform X2
STRINGXP_007150193.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.24e-38GATA family protein