PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi04g02710.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 309aa MW: 34970.4 Da PI: 7.9414

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi04g02710.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	97.7	1.7e-30	18	93	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++ls+ +++ +g+kk Lvfy+gr pkg+ktdW+m+eyrl Vradi04g02710.1 18 GEEEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKPILSSsGSKRIGVKKALVFYSGRPPKGSKTDWIMNEYRL 93 678***********************************9977888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.239	1	124	IPR003441	NAC domain
SuperFamily	SSF101941	1.06E-37	12	124	IPR003441	NAC domain
Pfam	PF02365	1.6E-14	20	93	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MKPFFCFCCE FADKSLFGEE EWYFFSPRDR KYPNGLRPNR AAASGYWKAT GTDKPILSSS 60 GSKRIGVKKA LVFYSGRPPK GSKTDWIMNE YRLIDTITKS PRLKGSMRVG ILLDDWVLCR 120 VRHKGYSSKI SGENQENPSE LNLSAKLPRS EGYPTNMNCR ADMITDYQYK DYQIIASILV 180 GAPVSPTENM PNMSFKGCKG TNLVSVFEDG LTKVNSQMTF PSLDSYFNPL TRKSNEDEQY 240 GNLISFNRKF NAEDKMDESP SRVLASRELN CYNQNQSEDD IFSGNPPDTG IDFQDLNDLV 300 FTGRYPQC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-43	13	129	64	170	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-43	13	129	64	170	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-43	13	129	64	170	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-43	13	129	64	170	NO APICAL MERISTEM PROTEIN
3swm_A	4e-43	13	129	67	173	NAC domain-containing protein 19
3swm_B	4e-43	13	129	67	173	NAC domain-containing protein 19
3swm_C	4e-43	13	129	67	173	NAC domain-containing protein 19
3swm_D	4e-43	13	129	67	173	NAC domain-containing protein 19
3swp_A	4e-43	13	129	67	173	NAC domain-containing protein 19
3swp_B	4e-43	13	129	67	173	NAC domain-containing protein 19
3swp_C	4e-43	13	129	67	173	NAC domain-containing protein 19
3swp_D	4e-43	13	129	67	173	NAC domain-containing protein 19
4dul_A	4e-43	13	129	64	170	NAC domain-containing protein 19
4dul_B	4e-43	13	129	64	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi04g02710.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014498121.2	0.0	NAC transcription factor ONAC010
Refseq	XP_017423161.1	0.0	PREDICTED: NAC transcription factor 56-like
TrEMBL	A0A0S3SGL1	0.0	A0A0S3SGL1_PHAAN; Uncharacterized protein
STRING	XP_007150216.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2416	29	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	4e-51	NAC-like, activated by AP3/PI