PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g02170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WOX | ||||||||
Protein Properties | Length: 196aa MW: 22083 Da PI: 10.4498 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 18 | 77 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ Le+l+++ r+p+ae+++e +++l +++ ++V++WFqN++a++++ Vradi04g02170.1 18 SRWSPTREQIAMLEDLYRQgMRTPNAEQIQEVTSRLraygHIQGKNVFYWFQNHKARQRQ 77 6*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 113 | 1.6e-36 | 17 | 79 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +RW+Pt eQi +Le+ly++G+rtPn+e+iq++t++L++yG+i++kNVfyWFQN+kaR+rqkq Vradi04g02170.1 17 VSRWSPTREQIAMLEDLYRQGMRTPNAEQIQEVTSRLRAYGHIQGKNVFYWFQNHKARQRQKQ 79 68***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-12 | 13 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.046 | 13 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-5 | 15 | 82 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.2E-17 | 18 | 77 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-8 | 18 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.85E-4 | 19 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010654 | Biological Process | apical cell fate commitment | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MGSRSAIRRE SSRTHSVSRW SPTREQIAML EDLYRQGMRT PNAEQIQEVT SRLRAYGHIQ 60 GKNVFYWFQN HKARQRQKQK LESIAHSNSF LPVSHPICQN VVCAPFYSQQ SGMNFYPQPE 120 KVVAAGGIVG TVVPFGMLKI CDGQQIYQQL RQRVQPDYNI NDKKTLTLFP LHPTGILKEK 180 TANQGSSHAS ASGSH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g02170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-139 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014496704.1 | 1e-146 | WUSCHEL-related homeobox 4-like | ||||
TrEMBL | A0A1S3TSG3 | 1e-145 | A0A1S3TSG3_VIGRR; WUSCHEL-related homeobox 4-like | ||||
STRING | GLYMA13G41000.1 | 6e-74 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8256 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 5e-40 | WUSCHEL related homeobox 2 |