PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g01660.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 342aa    MW: 38415.8 Da    PI: 9.0398
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g01660.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.27.7e-22116210183
         trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyf 82 
                      +Wt++ v++Li++++ ++++   g            +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++t ++++++ ++ 
  Vradi04g01660.1 116 KWTDNVVRLLITVVSCVGDDGTIGGvdghkrkpgvlQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTcCQVVENPALM 209
                      7**************888888876555566777788**********************************************846777666665 PP

         trihelix  83 d 83 
                      d
  Vradi04g01660.1 210 D 210
                      5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-17114204No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MNSSGLGGGF LSGPSGAILD LESSFHRHQQ TQLGHPSITG QQHLNIMGGL ESDHPIGLIE  60
VKNLNAGLNF AKGKAIAPSN SNELSEEDEP SYAEEGNCEN LDGGKSKKGS PWQRMKWTDN  120
VVRLLITVVS CVGDDGTIGG VDGHKRKPGV LQKKGKWKTV SKIMISKGCH VSPQQCEDKF  180
NDLNKRYKRL NDILGRGTCC QVVENPALMD SIPNLSTKMK DDVEMARVFQ DPGKSLREQR  240
EWIKIQMLQL QEQNISYQAQ ALELEKQRLK WLRYCSKKDR ELERLRLENK RMKLENERRI  300
LKLKQKELET DFSTSEMSLD PASIGINRPQ GREHISLGRQ Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g01660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022635334.11e-153uncharacterized protein LOC106759326 isoform X1
RefseqXP_022635335.11e-153uncharacterized protein LOC106759326 isoform X1
TrEMBLA0A445BV830.0A0A445BV83_ARAHY; Uncharacterized protein
TrEMBLA0A445BVB40.0A0A445BVB4_ARAHY; Uncharacterized protein
STRINGXP_007150380.11e-143(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.16e-54sequence-specific DNA binding transcription factors