PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g01270.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 224aa    MW: 25240.6 Da    PI: 9.7068
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g01270.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.93.8e-11110151351
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                       +GV++  k+ +W A I++      +k+++lg+ g+ eeAa ++++a+ 
  Vradi04g01270.1 110 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 151
                      79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-5109152IPR001471AP2/ERF domain
SMARTSM003805.0E-4109166IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-7110154IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-6112160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVSLRRRRLL GLCSGNSSFV TPLPLYCENL SSLENSTQQA KPKSEQPVLS DDASNLDSNT  60
AVLEEPGSSN VSGSSSSKEQ LIQPITAGPP IKRRKRHRRK NLHNQEPCLM RGVYFKNMKW  120
QAAIKVDKKQ IHLGTVGSQE EAAHLYDRAA FMCGREPNFE LPEEEKRELS KFKWDEFLAM  180
TRQAITRKKH KRRLSPGPGN SHDMLPLPKD DWDSKQGVSE DAE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186193RKKHKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g01270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014498244.11e-166ethylene-responsive transcription factor-like protein At4g13040 isoform X1
RefseqXP_014498245.11e-166ethylene-responsive transcription factor-like protein At4g13040 isoform X1
RefseqXP_014498247.11e-166ethylene-responsive transcription factor-like protein At4g13040 isoform X1
TrEMBLA0A1S3TWV91e-165A0A1S3TWV9_VIGRR; ethylene-responsive transcription factor-like protein At4g13040 isoform X1
STRINGXP_007140664.11e-137(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.18e-48ERF family protein