PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0473s00050.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 191aa MW: 22103.6 Da PI: 4.7114

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0473s00050.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	113.2	2.7e-35	8	127	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGf+F Ptdeelvv++L++k++ +++ +vi+++++y ++Pw+L+ ++ ae k+wy++s+r +nr+t +gyW g +++v Vradi0473s00050.1 8 LPPGFHFYPTDEELVVHFLQRKANLLPCHP-DVIPDLELYPYDPWELHGRALAEGKQWYYYSRRT--------QNRVTGNGYWMPMGMEEPV 90 79***********************999.99**********97777889***984........58************9 PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +++ vg+kk vf+ g+ap+g+ t+W+m+eyrl Vradi0473s00050.1 91 ITSsSNKRVGMKKYYVFHVGEAPDGNTTNWIMQEYRL 127 98867788*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-47	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	44.641	8	158	IPR003441	NAC domain
Pfam	PF02365	1.5E-21	9	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MADNNVNLPP GFHFYPTDEE LVVHFLQRKA NLLPCHPDVI PDLELYPYDP WELHGRALAE 60 GKQWYYYSRR TQNRVTGNGY WMPMGMEEPV ITSSSNKRVG MKKYYVFHVG EAPDGNTTNW 120 IMQEYRLLDS ASSSRSSRRR PQPKPDHSKW VICRVYERDN DDDDGDGTEL SCLDEVFLSL 180 DDLEEISLPN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-41	4	160	13	167	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-41	4	160	13	167	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-41	4	160	13	167	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-41	4	160	13	167	NO APICAL MERISTEM PROTEIN
3swm_A	6e-41	4	160	16	170	NAC domain-containing protein 19
3swm_B	6e-41	4	160	16	170	NAC domain-containing protein 19
3swm_C	6e-41	4	160	16	170	NAC domain-containing protein 19
3swm_D	6e-41	4	160	16	170	NAC domain-containing protein 19
3swp_A	6e-41	4	160	16	170	NAC domain-containing protein 19
3swp_B	6e-41	4	160	16	170	NAC domain-containing protein 19
3swp_C	6e-41	4	160	16	170	NAC domain-containing protein 19
3swp_D	6e-41	4	160	16	170	NAC domain-containing protein 19
4dul_A	6e-41	4	160	13	167	NAC domain-containing protein 19
4dul_B	6e-41	4	160	13	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0473s00050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-142	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014492319.1	1e-142	NAC domain-containing protein 104
Refseq	XP_017431433.1	1e-142	PREDICTED: NAC domain-containing protein 104-like
Swissprot	Q8GWK6	2e-84	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A0L9TLG1	1e-140	A0A0L9TLG1_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R0D2	1e-140	A0A0S3R0D2_PHAAN; Uncharacterized protein
TrEMBL	A0A1S3TEY6	1e-140	A0A1S3TEY6_VIGRR; NAC domain-containing protein 104
STRING	XP_007159075.1	1e-140	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	2e-81	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]