PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0426s00020.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 209aa MW: 23370.1 Da PI: 6.8084

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0426s00020.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.6	6.2e-18	95	144	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+++AeIrd + ng r+++g+f+tae Aa a+++a+ + +g Vradi0426s00020.1 95 FRGVRRRP-WGKFAAEIRDSTRNG--VRVWIGTFDTAEAAALAYDQAAFSTRG 144 8*****.******44465..********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	2.4E-34	94	158	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.313	94	152	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.7E-29	95	153	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.4E-10	95	106	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.7E-21	95	153	IPR016177	DNA-binding domain
Pfam	PF00847	1.9E-12	95	144	IPR001471	AP2/ERF domain
CDD	cd00018	6.29E-18	95	153	No hit	No description
PRINTS	PR00367	5.4E-10	118	134	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MFQHESLNNP FVNSSVCAET FHWEEFFLFN EENSTNIPLS FNEPSQMKES SSSDSNYSGS 60 LVSSESQVEV SSNLSDASEG KVVKETQGPK EKRPFRGVRR RPWGKFAAEI RDSTRNGVRV 120 WIGTFDTAEA AALAYDQAAF STRGSMAVLN FPEEVVRESL KDMPNKPWED GSSPVLALKK 180 KHTMRRKFVV VGIRIRSSFA FSDALVKE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-27	91	154	11	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11950980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0426s00020.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269\|PubMed:11950980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014522685.1	1e-136	ethylene-responsive transcription factor 1B
Swissprot	Q8VYM0	8e-48	ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBL	A0A1S3VWJ2	1e-135	A0A1S3VWJ2_VIGRR; ethylene-responsive transcription factor 1B
STRING	XP_007144904.1	6e-84	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15185	10	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31230.1	2e-40	ethylene-responsive element binding factor 15

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang H, et al. Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea. Front Plant Sci, 2015. 6: p. 686 [PMID:26388886]