PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0425s00040.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 248aa MW: 27845.8 Da PI: 6.7374

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0425s00040.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	151.5	4.1e-47	4	134	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 l pGfrF Pt+eelv +yL++++eg+++++++vi+ ++i+ vePw+Lp+ ++++++++w+fFs+r++++++g r+nr+t+sgyWkatg+ Vradi0425s00040.1 4 LSPGFRFYPTEEELVAFYLHNQLEGQRHDTSRVIPVIEINGVEPWNLPTlageRCRGDTEQWFFFSPRQEREERGGRPNRTTASGYWKATGS 95 579*************************9************9546666666888**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 +v+s++++++g+kkt+vfy+g+ap+g+kt+W mhey+ Vradi0425s00040.1 96 PCHVYSSDNKVIGMKKTMVFYTGKAPSGRKTKWKMHEYK 134 ************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-49	3	159	IPR003441	NAC domain
PROSITE profile	PS51005	48.386	4	161	IPR003441	NAC domain
Pfam	PF02365	3.3E-25	6	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MADLSPGFRF YPTEEELVAF YLHNQLEGQR HDTSRVIPVI EINGVEPWNL PTLAGERCRG 60 DTEQWFFFSP RQEREERGGR PNRTTASGYW KATGSPCHVY SSDNKVIGMK KTMVFYTGKA 120 PSGRKTKWKM HEYKAIQHSH QSNATPPKLR HEFSLCRVYV ISGSFRSFDR RPVEIGRAEL 180 GVDGDRGGGA STSGQERAAM VDGSSSPDDT CHSGEAGEDC NASNRVEEPL WEWEHLIGHD 240 DPYVKHA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-37	4	159	20	166	NAC domain-containing protein 19
3swm_B	2e-37	4	159	20	166	NAC domain-containing protein 19
3swm_C	2e-37	4	159	20	166	NAC domain-containing protein 19
3swm_D	2e-37	4	159	20	166	NAC domain-containing protein 19
3swp_A	2e-37	4	159	20	166	NAC domain-containing protein 19
3swp_B	2e-37	4	159	20	166	NAC domain-containing protein 19
3swp_C	2e-37	4	159	20	166	NAC domain-containing protein 19
3swp_D	2e-37	4	159	20	166	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0425s00040.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	1e-156	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014522668.1	0.0	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	1e-86	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1S3VWC0	0.0	A0A1S3VWC0_VIGRR; NAC domain-containing protein 90-like
STRING	XP_007150056.1	1e-146	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-82	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]