PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi03g08960.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 279aa MW: 31139.2 Da PI: 8.7233

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi03g08960.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	31.2	6.6e-10	16	40	1	25
NAM 1 lppGfrFhPtdeelvveyLkkkveg 25 lppGfrFhPtdeel+++yL +k++ Vradi03g08960.1 16 LPPGFRFHPTDEELITHYLYRKAKM 40 79*******************9875 PP
2	NAM	112.8	3.6e-35	38	115	51	129
NAM 51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +k +ekewyfF+ rd+ky+tg r+nrat+sgyWkatgkdke+++ +++ vg+kktLvfykgrapkgektdWvmheyrle Vradi03g08960.1 38 AKMGEKEWYFFCVRDRKYPTGLRTNRATESGYWKATGKDKEIFR-GKSPVGMKKTLVFYKGRAPKGEKTDWVMHEYRLE 115 456899************************************.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.086	1	139	IPR003441	NAC domain
SuperFamily	SSF101941	1.7E-52	14	139	IPR003441	NAC domain
Pfam	PF02365	1.5E-29	17	114	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MENVSVLCKE EVPMDLPPGF RFHPTDEELI THYLYRKAKM GEKEWYFFCV RDRKYPTGLR 60 TNRATESGYW KATGKDKEIF RGKSPVGMKK TLVFYKGRAP KGEKTDWVMH EYRLEGKFSV 120 PNLPKTAKNE WVICRVFQKS SGGKKTHIDG IMMMDSYGNN ELGSSALPPL TDSSPSIGNT 180 KALSVSDQAP PTLPSPGSSN HYLRSFFNNH GKGSFLRNGF EPETEMVSVS QETGVSTEVN 240 AETSSVVSNL EMGNRVFENQ NNPIGSAAPV DLASLWNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-42	14	145	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-42	14	145	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-42	14	145	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-42	14	145	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-41	14	145	18	174	NAC domain-containing protein 19
3swm_B	1e-41	14	145	18	174	NAC domain-containing protein 19
3swm_C	1e-41	14	145	18	174	NAC domain-containing protein 19
3swm_D	1e-41	14	145	18	174	NAC domain-containing protein 19
3swp_A	1e-41	14	145	18	174	NAC domain-containing protein 19
3swp_B	1e-41	14	145	18	174	NAC domain-containing protein 19
3swp_C	1e-41	14	145	18	174	NAC domain-containing protein 19
3swp_D	1e-41	14	145	18	174	NAC domain-containing protein 19
4dul_A	8e-42	14	145	15	171	NAC domain-containing protein 19
4dul_B	8e-42	14	145	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi03g08960.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ028773	1e-146	DQ028773.1 Glycine max NAC domain protein NAC5 (NAC5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014495267.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-104	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1S3TNH5	0.0	A0A1S3TNH5_VIGRR; NAC domain-containing protein 100
STRING	XP_007138169.1	1e-167	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-106	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]