PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi03g06540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GRAS | ||||||||
Protein Properties | Length: 558aa MW: 64107 Da PI: 5.6585 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 259.3 | 1.4e-79 | 185 | 555 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykalppsetsekn...sseelaalklfsevsPi 90 + Ll++Ae v +++e+a++lL + + ++spd +p+qR++++f++AL++r+ r + +++k + +e+ + ++ +++ +f++ P+ Vradi03g06540.1 185 AQFLLAAAERVGCHQFERANRLLLHCQLNSSPDNgSPVQRVIFHFAQALRERIDRgLGRTTAKGSEKKEE---RgwiQKIDTNVALTFHQNIPF 275 5789*************************9999879*******************333333333333333...23335555566677******* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 ++ ++t q+I+e v++e+++H+iD++ G++ L+qaL++R+ + l+iT+++ ++ ++ ++etg+rL++fAe+l++pf++n++ + Vradi03g06540.1 276 NQVMQFTGIQTIVEHVASETKIHVIDLETVCGVHNTVLMQALTERQdCKVQLLKITALALNS--RRSIIQETGKRLTSFAESLNLPFSYNAVFV 367 **********************************************556679********55..999*************************** PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 +++ +++ ++++ +gEa+aV + + l +++++ ++e+ +++++++++P +++v e ea+hns+ F++rf+eal +ysa fd+l + + Vradi03g06540.1 368 RDFGEIREGDFEIGEGEAVAVYSPYFLRCMVSRPDCMEK----LMRVIWNMKPVIMIVLEVEANHNSPIFVNRFIEALFFYSAYFDCLGSCIND 457 ******************************988888888....*********************************************888887 PP GRAS 278 es.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369 e+ e r+k+E++ l++ i+++va+eg+er+ r+ + Wr+ + + + + +se+ qa+l+ ++++ ++ ++e++ +sl+lgWk+ p+ s Vradi03g06540.1 458 ENdESRRKIEAV-LSEGIREIVAMEGRERKVRNVKIDVWRKFFARYRMIETGFSESSLYQAHLVNKQFAfGKFCTLEKNAKSLILGWKGTPIHS 550 776999999999.********************************************************888799******************* PP GRAS 370 vSaWr 374 +SaWr Vradi03g06540.1 551 ISAWR 555 ****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 35.394 | 158 | 534 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.7E-77 | 185 | 555 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MEIDQFSSTA LNLREILVGY GSTQEDVFQE KESFSGMEFL GPIEDEKGTK LFEDEDQKQL 60 QEPQVDKLLE EFNCDYDMQL KPTPQFDETT WPAKHDIESA LPPSLASLEL LRNYRSRFKR 120 TSEQNIAKPS LDHHQISTEE IMRVAGARYV QYSAHWNDSF CIPMHPYGLD FGGLSEEENR 180 DVELAQFLLA AAERVGCHQF ERANRLLLHC QLNSSPDNGS PVQRVIFHFA QALRERIDRG 240 LGRTTAKGSE KKEERGWIQK IDTNVALTFH QNIPFNQVMQ FTGIQTIVEH VASETKIHVI 300 DLETVCGVHN TVLMQALTER QDCKVQLLKI TALALNSRRS IIQETGKRLT SFAESLNLPF 360 SYNAVFVRDF GEIREGDFEI GEGEAVAVYS PYFLRCMVSR PDCMEKLMRV IWNMKPVIMI 420 VLEVEANHNS PIFVNRFIEA LFFYSAYFDC LGSCINDEND ESRRKIEAVL SEGIREIVAM 480 EGRERKVRNV KIDVWRKFFA RYRMIETGFS ESSLYQAHLV NKQFAFGKFC TLEKNAKSLI 540 LGWKGTPIHS ISAWRFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 5e-31 | 192 | 554 | 26 | 377 | Protein SCARECROW |
5b3h_D | 5e-31 | 192 | 554 | 26 | 377 | Protein SCARECROW |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi03g06540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022634749.1 | 0.0 | DELLA protein RGL1-like | ||||
TrEMBL | A0A3Q0EWF1 | 0.0 | A0A3Q0EWF1_VIGRR; DELLA protein RGL1-like | ||||
STRING | XP_007163182.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 3e-43 | RGA-like 1 |