PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g06540.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 558aa    MW: 64107 Da    PI: 5.6585
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g06540.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS259.31.4e-791855552374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykalppsetsekn...sseelaalklfsevsPi 90 
                       + Ll++Ae v  +++e+a++lL + + ++spd  +p+qR++++f++AL++r+ r  + +++k  + +e+   +   ++  +++  +f++  P+
  Vradi03g06540.1 185 AQFLLAAAERVGCHQFERANRLLLHCQLNSSPDNgSPVQRVIFHFAQALRERIDRgLGRTTAKGSEKKEE---RgwiQKIDTNVALTFHQNIPF 275
                      5789*************************9999879*******************333333333333333...23335555566677******* PP

             GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                       ++ ++t  q+I+e v++e+++H+iD++   G++   L+qaL++R+  +   l+iT+++ ++  ++  ++etg+rL++fAe+l++pf++n++ +
  Vradi03g06540.1 276 NQVMQFTGIQTIVEHVASETKIHVIDLETVCGVHNTVLMQALTERQdCKVQLLKITALALNS--RRSIIQETGKRLTSFAESLNLPFSYNAVFV 367
                      **********************************************556679********55..999*************************** PP

             GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      +++ +++  ++++ +gEa+aV + + l  +++++ ++e+    +++++++++P +++v e ea+hns+ F++rf+eal +ysa fd+l + +  
  Vradi03g06540.1 368 RDFGEIREGDFEIGEGEAVAVYSPYFLRCMVSRPDCMEK----LMRVIWNMKPVIMIVLEVEANHNSPIFVNRFIEALFFYSAYFDCLGSCIND 457
                      ******************************988888888....*********************************************888887 PP

             GRAS 278 es.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369
                      e+ e r+k+E++ l++ i+++va+eg+er+ r+ +   Wr+ + +  + +  +se+   qa+l+ ++++ ++  ++e++ +sl+lgWk+ p+ s
  Vradi03g06540.1 458 ENdESRRKIEAV-LSEGIREIVAMEGRERKVRNVKIDVWRKFFARYRMIETGFSESSLYQAHLVNKQFAfGKFCTLEKNAKSLILGWKGTPIHS 550
                      776999999999.********************************************************888799******************* PP

             GRAS 370 vSaWr 374
                      +SaWr
  Vradi03g06540.1 551 ISAWR 555
                      ****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.394158534IPR005202Transcription factor GRAS
PfamPF035144.7E-77185555IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MEIDQFSSTA LNLREILVGY GSTQEDVFQE KESFSGMEFL GPIEDEKGTK LFEDEDQKQL  60
QEPQVDKLLE EFNCDYDMQL KPTPQFDETT WPAKHDIESA LPPSLASLEL LRNYRSRFKR  120
TSEQNIAKPS LDHHQISTEE IMRVAGARYV QYSAHWNDSF CIPMHPYGLD FGGLSEEENR  180
DVELAQFLLA AAERVGCHQF ERANRLLLHC QLNSSPDNGS PVQRVIFHFA QALRERIDRG  240
LGRTTAKGSE KKEERGWIQK IDTNVALTFH QNIPFNQVMQ FTGIQTIVEH VASETKIHVI  300
DLETVCGVHN TVLMQALTER QDCKVQLLKI TALALNSRRS IIQETGKRLT SFAESLNLPF  360
SYNAVFVRDF GEIREGDFEI GEGEAVAVYS PYFLRCMVSR PDCMEKLMRV IWNMKPVIMI  420
VLEVEANHNS PIFVNRFIEA LFFYSAYFDC LGSCINDEND ESRRKIEAVL SEGIREIVAM  480
EGRERKVRNV KIDVWRKFFA RYRMIETGFS ESSLYQAHLV NKQFAFGKFC TLEKNAKSLI  540
LGWKGTPIHS ISAWRFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-3119255426377Protein SCARECROW
5b3h_D5e-3119255426377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g06540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022634749.10.0DELLA protein RGL1-like
TrEMBLA0A3Q0EWF10.0A0A3Q0EWF1_VIGRR; DELLA protein RGL1-like
STRINGXP_007163182.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-43RGA-like 1