PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g06370.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 271aa    MW: 30890.4 Da    PI: 4.7136
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g06370.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-081444131
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartm 31
                     +grWT+eEde+l ++++  G g+W++ ++  
  Vradi03g06370.1 14 KGRWTAEEDEILTKYIQANGEGSWRRLPKNA 44
                     79***********************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-10544IPR009057Homeodomain-like
SuperFamilySSF466893.29E-7845IPR009057Homeodomain-like
PROSITE profilePS500907.805963IPR017877Myb-like domain
PfamPF002495.3E-61444IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGRTPCCEKV GMKKGRWTAE EDEILTKYIQ ANGEGSWRRL PKNADIITLT LPPKRKRGRT  60
SRWAMKKNKT YCAQKQKQPL LPAVPLPPTP PLETEKHSST HENTTTQEEE NLGTNAVWVE  120
GEKEIMNKED DIWGPYDKEV INGGEWDQVL SFESFNDIMN SYCPQASGCW TISDEGYRES  180
SEVVGNKTCD HTVTSSGREK RCFFSAKASS DSDLCQSAVQ LDHKDESVSW EQHQSLLSWL  240
CEDEDWEKDL QSVCEIDPQK QKDMVDWFLS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g06370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495618.11e-152transcription factor MYB111-like
TrEMBLA0A1S3TP971e-150A0A1S3TP97_VIGRR; transcription factor MYB111-like
STRINGXP_007163163.17e-65(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-21myb domain protein 111