PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g04270.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 463aa    MW: 52517.3 Da    PI: 6.9872
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g04270.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind90.61.9e-28151541102
                      HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.................... CS
     HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.................... 74 
                      aFl+k++++++d++l+ +isws+ g sfvv+d++ fa +vLp+ Fkh+nf+SFvRQLn+Y   k ++ ++++ +                    
  Vradi03g04270.1  15 AFLSKTFDLVDDPSLDPIISWSSAGVSFVVWDPTLFAIHVLPRNFKHNNFSSFVRQLNTYVDVKNRTGSRRNVAivgisssadsvprflfcaas 108
                      69**********************************************************766666655554449******************* PP

                      ..................XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
     HSF_DNA-bind  75 ..................kekiweFkhksFkkgkkellekikrkks 102
                                        +++ weF ++ F++gk+ ll++i+r+++
  Vradi03g04270.1 109 qdllcqhdhylvfgfrkiDSDKWEFFNEAFRRGKRYLLKNIQRRRH 154
                      99999999888887765449***********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.8E-261181IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.0E-4212152IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.7E-311382IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.7E-131639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-2516152IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-135466IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-136779IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.8E-26119152IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.7E-31120152IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
LPHPLECLQG NPVPAFLSKT FDLVDDPSLD PIISWSSAGV SFVVWDPTLF AIHVLPRNFK  60
HNNFSSFVRQ LNTYVDVKNR TGSRRNVAIV GISSSADSVP RFLFCAASQD LLCQHDHYLV  120
FGFRKIDSDK WEFFNEAFRR GKRYLLKNIQ RRRHPHPHQV GRHIVHWSDA GKAGLEFDIE  180
RLGKEKSVLM QEVVELRQLQ RTTLHRARQV NRRLQSAEVI HKQMLSFLAR LLENPALLTC  240
LQHGKEQRDV ESPKVRRRFV KQHQERTRVS DFLKEGQIVS YQPDWRNVTI SSKIPEMCPT  300
SLVGCSNYLS RDLAKELSEG GENLVSDGLA PVHEVMPTSD TIGLKSSSFG LEDTLLKGKN  360
VMSTNQEDLL AEEIVSFPED LTSEAGFPEF SPLVGTESII KPEDKWKTRF HFSGAPTSST  420
DSPATNHEGQ EFRFTSGMSD TWDICSLWAT QSFRTDDPAL DE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-171315226129Heat shock factor protein 1
5d5v_B1e-171315226129Heat shock factor protein 1
5d5v_D1e-171315226129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g04270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495274.10.0heat stress transcription factor A-2e
TrEMBLA0A1S3TNE10.0A0A1S3TNE1_VIGRR; heat stress transcription factor A-2e
STRINGGLYMA03G34900.11e-180(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-73heat shock transcription factor A3