PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g02400.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 193aa    MW: 22103.7 Da    PI: 8.0653
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g02400.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind643.7e-202799102
                      HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
     HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                      ++ed+++++++sw+ +g++fvv+++ efa+++Lp++Fkhsnf+SF       gF+kv +++         weF ++ Fkkg++e+l++i+r+k 
  Vradi03g02400.1   2 LVEDPATDNVVSWNVDGTAFVVWQPAEFARDLLPTFFKHSNFSSF-------GFRKVATSR---------WEFLNERFKKGEREKLNEIQRRKA 79 
                      799*****************************************9.......9*****999.........*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.9E-18277IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.4E-28277IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.6E-20277IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.9E-17277IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MLVEDPATDN VVSWNVDGTA FVVWQPAEFA RDLLPTFFKH SNFSSFGFRK VATSRWEFLN  60
ERFKKGEREK LNEIQRRKAW SNKQPTGHQD CDEDERSSST SSSSGYSTLV DENKRLKKEN  120
GVLNSELRSM KRKCKELVDL VAKYSSHAQD KEEDERPMLF GVRLDVEGGR EIKRNRAEIS  180
ESASIMLSQS CK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g02400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-138AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495494.11e-127heat stress transcription factor B-3-like
SwissprotO222301e-51HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A1S3TP151e-126A0A1S3TP15_VIGRR; heat stress transcription factor B-3-like
STRINGXP_007162180.11e-109(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.14e-48heat shock transcription factor B3