PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g02010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 319aa    MW: 34973.4 Da    PI: 5.998
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g02010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-09169216455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++iN ++  L+el+P +    +k    a++L + +++++sLq
  Vradi03g02010.1 169 SHSLAERARREKINARMKLLQELVPGC----DKISGTAMVLDEIINHVQSLQ 216
                      8*************************9....78899***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.88E-10163220No hitNo description
SuperFamilySSF474593.01E-15163234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.653165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-15166233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-7169216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-9171221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEQAPVGLRG SVHEGATLES IQFNEEIQGI MAPAPAPENA SSFTALLELP PTQAVELLHS  60
PNSDGARKPP TCHVSTNHKP YLLNSFGGNL TFPSNAALIE RAAKFSVFAG ENSTSPGEAC  120
LFRAGSGSNL DRVRGSLKKS KSVADETSVD SEKLPYVHVR VRRGQATDSH SLAERARREK  180
INARMKLLQE LVPGCDKISG TAMVLDEIIN HVQSLQRQVE ILSMKLAAVN PRIDFSLDSL  240
LATDGASLMD SNIPSMMTPL MWPEIPVNGN RQHYQQQWQF DAFHQPLWER EEVNHNFMTP  300
ENSLLSYDSS ANSGRPEF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g02010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6172390.0FJ617239.1 Glycine max bHLH transcription factor PTF1 (PTF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496023.10.0transcription factor bHLH48
SwissprotQ8VZ028e-92BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A1S3TQG80.0A0A1S3TQG8_VIGRR; transcription factor bHLH48
STRINGXP_007162273.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.13e-94bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]