PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0372s00060.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 254aa    MW: 28352.7 Da    PI: 10.2483
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0372s00060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA374.7e-121932171135
               GATA  11 lWRrgpdgnktLCnaCGlyyrkkgl 35 
                         WR gp g+ktLCnaCG++y++ +l
  Vradi0372s00060.1 193 EWRAGPLGPKTLCNACGVRYKSGRL 217
                        6********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-4187231IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.85E-8193241No hitNo description
PfamPF003208.8E-10193217IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-7193215IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.95E-7194229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MKRSTKFQVL GQVLFLALMA LYVSLIIGYE GVSLFATLAD NAIEPTTPQR WALRRSNASL  60
RPVSKPQPCN GAQVEEEDFG MEWLSVFVED CFSSKPSCLL APPGVETTSP STKPSSTMQR  120
PQQSYCPLQN FSVPGKARSK RKRLSAPRTK HTLSTWSHNF STQVLSSDPP LLKQAYWLAD  180
SELIVPKKKD EQEWRAGPLG PKTLCNACGV RYKSGRLLPE YRPAKSPTFV SYLHSNSHKR  240
VMEMRMSVLS TQK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0372s00060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523909.11e-119GATA transcription factor 2 isoform X1
RefseqXP_022632611.11e-119GATA transcription factor 2 isoform X2
TrEMBLA0A1S3W0X61e-118A0A1S3W0X6_VIGRR; GATA transcription factor 2 isoform X1
TrEMBLA0A3Q0ENE91e-118A0A3Q0ENE9_VIGRR; GATA transcription factor 2 isoform X2
STRINGXP_007151835.11e-103(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.17e-32GATA transcription factor 9