PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0349s00140.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 322aa    MW: 37194.1 Da    PI: 5.085
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0349s00140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33e-1992145356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k+++++ eq++ Le+ F +++++  e++ +LAk+lgL+ rqV +WFqNrRa++k
  Vradi0349s00140.1  92 KKRRLSVEQVQFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWK 145
                        56689************************************************9 PP
2HD-ZIP_I/II129.11.9e-4191183193
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekkrrls eqv++LE+sF+ee+kLeperK +la+eLglqprqva+WFqnrRAR+ktkq+Ekdy++L+++y+ lk++ + L +e+++L++e++
  Vradi0349s00140.1  91 EKKRRLSVEQVQFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWKTKQMEKDYDSLHACYNDLKASYDDLLREKDKLQAEVA 182
                        69**************************************************************************************9997 PP

        HD-ZIP_I/II  93 e 93 
                        +
  Vradi0349s00140.1 183 K 183
                        6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-1979149IPR009057Homeodomain-like
PROSITE profilePS5007117.57287147IPR001356Homeobox domain
SMARTSM003891.2E-1990151IPR001356Homeobox domain
CDDcd000861.56E-1892148No hitNo description
PfamPF000461.5E-1692145IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-2094154IPR009057Homeodomain-like
PRINTSPR000311.9E-5118127IPR000047Helix-turn-helix motif
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PRINTSPR000311.9E-5127143IPR000047Helix-turn-helix motif
PfamPF021831.1E-15147188IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MLSLFPHLIH HRHHHHQLLP PQALDFYSFT SSTYFNTVDH THGLPLRIQH GSRSIVSFGG  60
VQGGKGCKES FFLPYDDNGD EDTDEYFHQP EKKRRLSVEQ VQFLEKSFDE ENKLEPERKI  120
RLAKELGLQP RQVAIWFQNR RARWKTKQME KDYDSLHACY NDLKASYDDL LREKDKLQAE  180
VAKLSEKVFE REKLEEGNLY RAETKGFQEP LQKSMIDSAS EGEGSKVDIS SAKSDMFDSS  240
ESPRYTDGVH SALLETGDSS YVFEPDQSDV SQDEGDNLSK TLLPHYMFPK LEDVGYSDQP  300
HNSCHFGFPE EEDQAIWSWS Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0349s00140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522235.10.0homeobox-leucine zipper protein ATHB-13
TrEMBLA0A1S3VV970.0A0A1S3VV97_VIGRR; homeobox-leucine zipper protein ATHB-13
STRINGXP_007138213.11e-173(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-43homeobox 1