PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0347s00090.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 389aa    MW: 42635.1 Da    PI: 9.4253
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0347s00090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-10271318455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Vradi0347s00090.1 271 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 318
                        8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.02E-9265322No hitNo description
SuperFamilySSF474591.57E-17265335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-18267335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828267317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-8271318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10273323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MLVCKPNSPT QLATATLAAT IATPLARLRP PPRNTAIARN TTPSPHLYRV VAVPLPISPR  60
QSCLSPRLGG PRECRWKRSS KLLVKMQRKE PNDGSFAVEK KAEASNFWFE GDREERKEQN  120
ETHSSDPSKE IRFPPPNAPD ATAALCLSRA HFGHGLSDFS PGPASIGHKK RRDAEEEESV  180
KGVSTSNGVV EFVCVEDESF WVLGFVQKEG GGVGDGKRVK TTGNQKSESA KGEGESSSGK  240
LAEQGGKPPP EPPSKQDYIH VRARRGQATD SHSLAERARR EKISERMKIL QDLVPGCNKV  300
IGKALVLDEI INYIQSLQRQ VEFLSMKLEA VNSRIPSGIE VFPPKDFDQQ TFDTTGIAFA  360
SQPTREYSRG SSPEWLHMQV GSGFERAT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0347s00090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-141AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490523.11e-168transcription factor BHLH089
TrEMBLA0A1S3T9T01e-167A0A1S3T9T0_VIGRR; transcription factor BHLH089
STRINGXP_007157558.11e-144(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-77BIG PETAL P