PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0341s00020.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 341aa    MW: 39314.2 Da    PI: 7.8162
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0341s00020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.41.6e-5491341128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+v+yL++++++k++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfFs+r++ky++g r+nrat sgyWkatg+dk++
  Vradi0341s00020.1   9 LPPGFRFHPTDEELIVYYLCNQATSKPCPA-SIIPEVDIYKFDPWELPEKTDFGENEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDKAI 99 
                        79****************************.89***************99999*************************************** PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +s +++++g+kk Lvfykg+ pkg ktdW+mheyrl
  Vradi0341s00020.1 100 YS-GSKHIGVKKALVFYKGKPPKGIKTDWIMHEYRL 134
                        **.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-655161IPR003441NAC domain
PROSITE profilePS5100560.6839161IPR003441NAC domain
PfamPF023651.9E-2610134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEGRTSSVLP PGFRFHPTDE ELIVYYLCNQ ATSKPCPASI IPEVDIYKFD PWELPEKTDF  60
GENEWYFFSP RERKYPNGVR PNRATVSGYW KATGTDKAIY SGSKHIGVKK ALVFYKGKPP  120
KGIKTDWIMH EYRLIGSRRQ TNRQIGSMRL DDWVLCRIYK KKNMGKSLEA KEDYPIAQIN  180
LTPPNNETEQ EVVKFPRTSS LTHLLDMDYL GPISHILSDA SYTSSFDFQL NTANGGIDPF  240
IKPQPLEIPN NLYAADSVKY QWRVRISLDS SIIVTMNGLL RDVHVERISM TPFCWCLELR  300
KAVEINCELL KVMVWIDVRD WILNDENIRI LYALEVYGLL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-70516313167NO APICAL MERISTEM PROTEIN
1ut4_B2e-70516313167NO APICAL MERISTEM PROTEIN
1ut7_A2e-70516313167NO APICAL MERISTEM PROTEIN
1ut7_B2e-70516313167NO APICAL MERISTEM PROTEIN
3swm_A2e-70516616173NAC domain-containing protein 19
3swm_B2e-70516616173NAC domain-containing protein 19
3swm_C2e-70516616173NAC domain-containing protein 19
3swm_D2e-70516616173NAC domain-containing protein 19
3swp_A2e-70516616173NAC domain-containing protein 19
3swp_B2e-70516616173NAC domain-containing protein 19
3swp_C2e-70516616173NAC domain-containing protein 19
3swp_D2e-70516616173NAC domain-containing protein 19
4dul_A2e-70516313167NAC domain-containing protein 19
4dul_B2e-70516313167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0341s00020.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0287690.0DQ028769.1 Glycine max NAC domain protein NAC1 (NAC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490520.10.0NAC transcription factor 29
SwissprotK4BWV21e-114NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLA0A1S3T9S90.0A0A1S3T9S9_VIGRR; NAC transcription factor 29
STRINGGLYMA02G12220.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41033262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-115NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]