PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0338s00040.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 321aa    MW: 36062.4 Da    PI: 6.7299
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0338s00040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY551.7e-17138194259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        dD+y+WrKYGqK + + efpr    C+++   gC+++k+v+ ++++p++  itY g H+++
  Vradi0338s00040.1 138 DDKYAWRKYGQKGILNYEFPR----CSHKhdqGCKATKQVQLEQDNPRMYRITYIGLHTCN 194
                        8*******************8....55554559**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-17135194IPR003657WRKY domain
SuperFamilySSF1182909.55E-18135194IPR003657WRKY domain
SMARTSM007745.7E-27137195IPR003657WRKY domain
PROSITE profilePS5081113.861138191IPR003657WRKY domain
PfamPF031061.6E-17138193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MNNMVCAETE SVSAGKKREM MEEIIKGKKA AIELKILLQK PSGSEPFLSY HQLMASVLTS  60
FTQSLSIISS SSSEPSSPDG LPHRNLLNPT EYSSPVTASG NDPTSGHCSE KRSQKGGRGR  120
YNRCKGATRK IILSCTTDDK YAWRKYGQKG ILNYEFPRCS HKHDQGCKAT KQVQLEQDNP  180
RMYRITYIGL HTCNDIPMVT HKTTDFSTGE SYLLHSDRSS NVKDDLISSP NLAIKPVFPK  240
ETYTSSDLTD HKLLDSSMWL EYWKESEPFN STIMPLRKEF DNSADNAYSC ADIQNLDMDF  300
GGVASVLFDT HFHFDEDQFF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-15138193968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0338s00040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022631901.10.0probable WRKY transcription factor 70 isoform X2
TrEMBLA0A3Q0ELD90.0A0A3Q0ELD9_VIGRR; probable WRKY transcription factor 70 isoform X2
STRINGXP_007141317.11e-158(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.15e-26WRKY DNA-binding protein 54