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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Vradi0330s00070.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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| Family |
GRAS |
| Protein Properties |
Length: 405aa MW: 45659.4 Da PI: 6.0946 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vradi0330s00070.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 359.5 | 4.9e-110 | 41 | 400 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
lv+ Ll+cAeav +d+++a+ l++r+ lasp+gd++qR+ +f+ +L+ rl++ ++l+ + n +++l a++l+++++P++
Vradi0330s00070.1 41 LVHMLLACAEAVGCRDNHQAELLINRIWALASPSGDALQRVSYCFATGLKCRLSK------STLTDMPLI--NRENKLEAFQLLYQITPYIA 124
689****************************************************......333333332..3567999************* PP
GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
f++++aN+aI +a +g++ +Hi+D+++++ lQW +L++a+ sRpegpp++RiTg+ ++e ++ +l++ + L + A++lg+++ef+++ +
Vradi0330s00070.1 125 FGFMAANEAIFQASQGKSSIHIVDLGMQHTLQWSSLIRAFVSRPEGPPMVRITGLTDNE--DNSKLQTSMNVLVQEASSLGMHLEFHTFSEP 214
*********************************************************55..9**************************8444 PP
GRAS 185 .rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
+ + +++e+L++++gEal Vn++lqlh+ ++es + e+L vk+lsP+ ++vveq+++hn++ Fl rfle+l+yysa+fdslea +
Vradi0330s00070.1 215 aSPSLFTVEKLNLREGEALFVNSILQLHKYVKESRGNLK---EILLSVKKLSPTAFTVVEQDTNHNGPFFLGRFLESLHYYSAIFDSLEACM 303
488899*************************77766666...9************************************************* PP
GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
pr+s++r+k+Er +++ei n+va eg er+erhe++ +Wr++l++aGF+ +pl+ ++q++++l+ ++ dgy++ +e+g l+lgWk+rp+
Vradi0330s00070.1 304 PRNSQQRMKIERLHFAEEILNIVAYEGPERIERHERVDQWRRQLGRAGFQVMPLK--CTSQVRMMLSVYDCDGYTLSSEKGNLLLGWKGRPV 393
******************************************************7..679******************************** PP
GRAS 368 vsvSaWr 374
++ SaW+
Vradi0330s00070.1 394 IMSSAWQ 400
******6 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 405 aa
Download sequence Send
to blast |
MYENLTMLEE EVVMSDPFGT LPEFVHCGKE ANLDVDQGLE LVHMLLACAE AVGCRDNHQA 60
ELLINRIWAL ASPSGDALQR VSYCFATGLK CRLSKSTLTD MPLINRENKL EAFQLLYQIT 120
PYIAFGFMAA NEAIFQASQG KSSIHIVDLG MQHTLQWSSL IRAFVSRPEG PPMVRITGLT 180
DNEDNSKLQT SMNVLVQEAS SLGMHLEFHT FSEPASPSLF TVEKLNLREG EALFVNSILQ 240
LHKYVKESRG NLKEILLSVK KLSPTAFTVV EQDTNHNGPF FLGRFLESLH YYSAIFDSLE 300
ACMPRNSQQR MKIERLHFAE EILNIVAYEG PERIERHERV DQWRRQLGRA GFQVMPLKCT 360
SQVRMMLSVY DCDGYTLSSE KGNLLLGWKG RPVIMSSAWQ VASV*
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
