PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi02g12120.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Trihelix

Protein Properties

Length: 397aa MW: 45150.9 Da PI: 6.2073

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi02g12120.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.2	9.7e-28	66	148	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k++++++ s +++y+++++ Vradi02g12120.1 66 WVQDETRSLIGLRREMDALFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGG--SGSAKMSYYKEID 148 ******************************************************************98..34558***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.2E-4	57	127	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.455	58	122	IPR017877	Myb-like domain
SMART	SM00717	0.0011	62	124	IPR001005	SANT/Myb domain
CDD	cd12203	6.39E-29	64	129	No hit	No description
Pfam	PF13837	7.8E-21	65	150	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MYLSEKPRPI DFYKEEGARD MMIEVVSNGE LAPPPPHHPP PMILGESSGE DPEVEIKAPK 60 KRAETWVQDE TRSLIGLRRE MDALFNTSKS NKHLWEQISA KMREKGFDRS PTMCTDKWRN 120 LLKEFKKAKH QDRGGSGSAK MSYYKEIDEI LRERNKNVQY KSPTPPPKVD SFMQFADKGS 180 DHSRNLTFEG LKGVVSSCID DTSISFGPVE ATGRPTLNLE RSLDHDGHPL AITTADAVAA 240 GGVPPWNWRE TSGNGGESQS CCGRVISVKW CDYTRRIGID GTPEAIKEAI RAAFRLRTKR 300 TFWLEDEDQI IRSIDREMPI GSYTLHLDEG MAIKLCLYDE SEHLPVHTED KVFYTENDYR 360 DFLTRRGWVC LREFDGYRNI DNLDDLRPGA IYRGVS*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MYLSEKPRPI DFYKEEGARD MMIEVVSNGE LAPPPPHHPP PMILGESSGE DPEVEIKAPK  60
KRAETWVQDE TRSLIGLRRE MDALFNTSKS NKHLWEQISA KMREKGFDRS PTMCTDKWRN  120
LLKEFKKAKH QDRGGSGSAK MSYYKEIDEI LRERNKNVQY KSPTPPPKVD SFMQFADKGS  180
DHSRNLTFEG LKGVVSSCID DTSISFGPVE ATGRPTLNLE RSLDHDGHPL AITTADAVAA  240
GGVPPWNWRE TSGNGGESQS CCGRVISVKW CDYTRRIGID GTPEAIKEAI RAAFRLRTKR  300
TFWLEDEDQI IRSIDREMPI GSYTLHLDEG MAIKLCLYDE SEHLPVHTED KVFYTENDYR  360
DFLTRRGWVC LREFDGYRNI DNLDDLRPGA IYRGVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	4e-48	60	146	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi02g12120.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014494379.1	0.0	trihelix transcription factor GT-1 isoform X1
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A1S3TKS5	0.0	A0A1S3TKS5_VIGRR; trihelix transcription factor GT-1 isoform X1
STRING	XP_007163722.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6817	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]