PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

888711

Common Name

ARALYDRAFT_888711

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Trihelix

Protein Properties

Length: 413aa MW: 47287.7 Da PI: 7.3655

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
888711	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.4	3.3e-27	88	169	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rr m+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k++++++ s +++y++++e 888711 88 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGN---GSAKMSYYKEIE 169 ******************************************************************94...566899*998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.0E-4	78	149	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.979	80	144	IPR017877	Myb-like domain
SMART	SM00717	0.0096	84	146	IPR001005	SANT/Myb domain
CDD	cd12203	2.30E-29	86	151	No hit	No description
Pfam	PF13837	1.3E-20	87	170	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MFISDKSRPS TDFYKDDNPN SSTTTTRDMM IDVTTTNESV DLQSHHHHNH NHHNRHLHQP 60 QPQQQILLGE SSGEDHEVKA PKKRAETWVQ DETRSLIMFR RGMDGLFNTS KSNKHLWEQI 120 SAKMREKGFD RSPTMCTDKW RNLLKEFKKA KHHDRGNGSA KMSYYKEIED ILRERNKKVT 180 PQYNKSPNTP PTSAKVDSFM QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI 240 TTVDAVAANG VTPWNWRETP GNGGDSHGQA FGGRVITVKF GDYTRRIGVD GSAEAIKEAI 300 RSAFGLRTRR AFWLEDEDQI IRCLDRDMPL GNYLLHLDNV CKTHLAGLAI RVCHYDESNQ 360 LPVHSEEKIF YTEEDYRDFL ARRGWTCLQV DGFRNIENMD DLQPGAVYRG VR*

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MFISDKSRPS TDFYKDDNPN SSTTTTRDMM IDVTTTNESV DLQSHHHHNH NHHNRHLHQP  60
QPQQQILLGE SSGEDHEVKA PKKRAETWVQ DETRSLIMFR RGMDGLFNTS KSNKHLWEQI  120
SAKMREKGFD RSPTMCTDKW RNLLKEFKKA KHHDRGNGSA KMSYYKEIED ILRERNKKVT  180
PQYNKSPNTP PTSAKVDSFM QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI  240
TTVDAVAANG VTPWNWRETP GNGGDSHGQA FGGRVITVKF GDYTRRIGVD GSAEAIKEAI  300
RSAFGLRTRR AFWLEDEDQI IRCLDRDMPL GNYLLHLDNV CKTHLAGLAI RVCHYDESNQ  360
LPVHSEEKIF YTEEDYRDFL ARRGWTCLQV DGFRNIENMD DLQPGAVYRG VR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	9e-56	82	167	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	25215497	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	888711

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228305	0.0	AK228305.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-74-C23.
GenBank	ATHGT	0.0	L36806.1 Arabidopsis thaliana (clone pDGT1) GT-1 mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002892750.1	0.0	trihelix transcription factor GT-1 isoform X1
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	D7KQG0	0.0	D7KQG0_ARALL; DNA binding protein GT-1
STRING	scaffold_101505.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2891	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Link Out ? help Back to Top
Phytozome	888711
Entrez Gene	9328812

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]