PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi02g10020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 232aa MW: 24970.9 Da PI: 7.9001 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 38.8 | 2.7e-12 | 1 | 28 | 102 | 129 |
NAM 102 lkktLvfykgrapkgektdWvmheyrle 129 +kktLvfy+grapkgek++Wvmheyrle Vradi02g10020.1 1 MKKTLVFYRGRAPKGEKSNWVMHEYRLE 28 8*************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02365 | 6.9E-5 | 1 | 27 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 17.382 | 1 | 42 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.36E-12 | 1 | 36 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MKKTLVFYRG RAPKGEKSNW VMHEYRLEGK FAYHYLSRSS KKNNTGGAST VSAAAATGSS 60 KKTRMSTSNT SSNMSLCPEP GSPCSIYLPP LLESSPYATS GSAAATFNDR ENYSFESAAA 120 TANQREHVSC FSTMSTDAAA FNHLAPPPEP PLDPFSRFHR NNIGVSAFPC LRSLHDNLNL 180 PFFFPPVVQG GSDVPNFTAI ANLPAPEDQR VADGSSGMPI VPSELDCMWG Y* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi02g10020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027911896.1 | 1e-147 | protein CUP-SHAPED COTYLEDON 2-like | ||||
TrEMBL | A0A4D6LDC1 | 1e-145 | A0A4D6LDC1_VIGUN; Uncharacterized protein | ||||
STRING | XP_007133204.1 | 1e-129 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3689 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 8e-24 | NAC family protein |