PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi02g09860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 337aa MW: 37837.5 Da PI: 7.0084 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.4 | 9.6e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrF Ptdeel+v+yL++kv+g++++l +i+evd+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk + + Vradi02g09860.1 14 LPPGFRFYPTDEELLVQYLCRKVAGHHFSL-PIIAEVDLYKFDPWVLPAKAVFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVIST 106 79**************************99.88***************8777899**********************************99999 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g++vg+kk Lvfy g+apkg+kt+W+mheyr+ Vradi02g09860.1 107 -EGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRV 139 .999****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.23E-64 | 9 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.909 | 14 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-26 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MGVQERDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FSLPIIAEVD LYKFDPWVLP 60 AKAVFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVISTEGRK VGIKKALVFY 120 VGKAPKGSKT NWIMHEYRVL DSSRKNNLGT TKLDDWVLCR IYKKNSSSQK VETNLWGKEC 180 SNGSSPSSSS HVEDMVESFL EIDDKCFNFP GVNSLKTMQQ QDEKFGFQNM RSGFSSDWVT 240 PPDLDSISEF GSGCGTQGMV NYEFNDLFVP SVPPFGHVEF MSGAPMEEEV QSCVRTQRAD 300 GAGYFQQNPN ARNLSGSNET FGLGLTDQQI RFGLRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-107 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-107 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-107 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-107 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-107 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-107 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-107 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-107 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00360 | DAP | Transfer from AT3G15500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi02g09860.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014491333.1 | 0.0 | NAC domain-containing protein 72 | ||||
Swissprot | A0A3Q7HH64 | 1e-125 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | A0A1S3TC40 | 0.0 | A0A1S3TC40_VIGRR; NAC domain-containing protein 72 | ||||
STRING | XP_007133057.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4429 | 33 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15500.1 | 1e-114 | NAC domain containing protein 3 |
Publications ? help Back to Top | |||
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