PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g01990.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 293aa    MW: 33413.4 Da    PI: 8.2991
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g01990.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.22.4e-47151422128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                       pGfrFhPt+eel+++yLk+ v gkkl+  +vi  ++iy+++PwdLp  +k +e+ewyfF++rdkk+ +g r+nr+t++g+Wkatg+d+++++ 
  Vradi02g01990.1  15 LPGFRFHPTEEELLDFYLKNMVVGKKLRY-DVIGFLNIYHHDPWDLPDLAKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTL 107
                      59**************************9.99***************8888899*************************************987 PP

              NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++ +gl+ktLvfy grap+g+ktdWvm+eyrl
  Vradi02g01990.1 108 sdPKRIIGLRKTLVFYMGRAPSGRKTDWVMNEYRL 142
                      666778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-564160IPR003441NAC domain
PROSITE profilePS5100553.78714160IPR003441NAC domain
PfamPF023651.4E-2516142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MATMEDMSMS GEIALPGFRF HPTEEELLDF YLKNMVVGKK LRYDVIGFLN IYHHDPWDLP  60
DLAKVGEREW YFFVPRDKKH GSGGRPNRTT EKGFWKATGS DRKIVTLSDP KRIIGLRKTL  120
VFYMGRAPSG RKTDWVMNEY RLPDNCKLPK EIVLCKIYRK ATSLKVLEER AEREMKQMVG  180
SPASPPSSTD TMSFSSPQEE ANVTLPLPLL QHVLKKESES EETMGCVVPK QEKTNNNKGS  240
CGASSLQMPF GKDNLPDLQL PMLTDWTQDT FWAQLNSPWL QNLTPSNILN FY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-4411601168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g01990.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493331.10.0NAC domain-containing protein 35
SwissprotQ10S653e-94NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A1S3THU40.0A0A1S3THU4_VIGRR; NAC domain-containing protein 35
STRINGXP_007131576.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62143251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-119NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]