PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0269s00010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 541aa    MW: 59580.5 Da    PI: 6.5117
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0269s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.41e-21120221199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f k+ltpsd+++ g +++p+ +a++          ++ +   l+++d +g  W++++iyr++++r+++t+GW++Fv+ ++L +gD+vvF   
  Vradi0269s00010.1 120 FSKILTPSDANNGGGFSVPRFCADSVfppldfrADPPVQ--LLSVTDVHGVAWRFRHIYRGTPRRHLFTTGWSKFVNHKKLIAGDSVVFV-- 207
                        88*****************9999999*****97556555..7************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++ +++  v+++r+
  Vradi0269s00010.1 208 KDFDGNVSVGIRRA 221
                        56788889999997 PP
2Auxin_resp738.9e-25259336182
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                        aa+ +s + +FevvY+Pra+ ++Fvv++e ve+a+++ ++ GmR+k+ +etedss+ ++ +Gtv++  ++d+      +Wr+L
  Vradi0269s00010.1 259 AAECVSRNAPFEVVYYPRAGFADFVVSAEVVEDAMRCAWAGGMRVKIGMETEDSSRMTWfQGTVISAYASDN-----GPWRML 336
                        6788999************************************************************99777.....555655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-33110226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-29114227IPR015300DNA-binding pseudobarrel domain
CDDcd100172.34E-19119220No hitNo description
PfamPF023626.4E-20120221IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97120222IPR003340B3 DNA binding domain
SMARTSM010192.1E-18120222IPR003340B3 DNA binding domain
PfamPF065074.4E-21259336IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MPLPQSPPNP RRVDPKIWRA CAGAAVHIPK LHSRVYYFPQ GHMEHASPSH SLSPPFRSLP  60
FVPCLVSSRD LLADPFSDEV FAKLLLTPLP HPFNRNNQND DSNIQTDDEE REFQNGVVSF  120
SKILTPSDAN NGGGFSVPRF CADSVFPPLD FRADPPVQLL SVTDVHGVAW RFRHIYRGTP  180
RRHLFTTGWS KFVNHKKLIA GDSVVFVKDF DGNVSVGIRR ATRFVSSSSP VEEEQPPAQG  240
EGFPRYATGR VSPKAVKAAA ECVSRNAPFE VVYYPRAGFA DFVVSAEVVE DAMRCAWAGG  300
MRVKIGMETE DSSRMTWFQG TVISAYASDN GPWRMLQVNW DEPEVLQNAK RVSPWQVELV  360
SPSLALHTAF SPSKRFRADQ GSGRLSDREG DPFFPMTGFS NSTMGNMDKK LLSYDTFPAG  420
MQGARHDLFS ASSFSNFLND NSYLYMGSSS FGNNTVQSLG IVSTDLNISS SQSDDMSPHS  480
QSSLHSFDTE FTGTRHCNTK VGSGSILLFG KIIQPAESPH DAADYIERDG SGGSREIEDS  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-621335851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0269s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492637.10.0auxin response factor 17
SwissprotQ84WU61e-158ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A1S3TFX20.0A0A1S3TFX2_VIGRR; Auxin response factor
STRINGXP_007141116.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-148auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]