PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0253s00080.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 239aa    MW: 26778.4 Da    PI: 5.1848
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0253s00080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.3e-104491655
                       HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                         +E++RR++++  f++L +llP+ +   p++ l   + + +A++YIksL+
  Vradi0253s00080.1 44 RLVEKNRRNQMKILFNKLNSLLPSyN---PKEVLPLPDQVDEAINYIKSLE 91
                       679*********************66...8888****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.8333890IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-1238109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.92E-63895No hitNo description
Gene3DG3DSA:4.10.280.108.9E-1241110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0024496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-64491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEAKVCVDGE EGAGSDIRDV AAGFNCMIMD QLGIQPPSTK VERRLVEKNR RNQMKILFNK  60
LNSLLPSYNP KEVLPLPDQV DEAINYIKSL EAKVKMAQEK KESLQGAKKR YRGCFSNNNG  120
ANLATAPLPK SPQLEIQEVG SSLQVVLTTG MDNQFIFYEI IRMLHEENIE VRSLNSSLTA  180
GDSVLHVVHA EIPQSFLQFG AAKVSERLKR FVNGSYSDVE TQHEWWDFDI GTDDIWGF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106112AKKRYRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0253s00080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493009.21e-157transcription factor bHLH162
TrEMBLA0A1S3TGW41e-156A0A1S3TGW4_VIGRR; transcription factor bHLH162
STRINGXP_007132724.11e-127(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-31bHLH family protein