PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0221s00080.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 165aa    MW: 18528 Da    PI: 8.0221
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0221s00080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-094383954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        r RR+ri ++f  L++++P        K++ +++Le A++Y+k L
  Vradi0221s00080.1 43 ARERRHRISDRFKILQSMVPGG-----SKMDTVSMLEGAIHYVKFL 83
                       699*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.7863483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-133996IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-114087IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.65E-134087No hitNo description
SMARTSM003539.0E-124089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-74383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MECINPTSCE GSSSKNKSKE KKGVKKGSKG GVKLSTDPQS VAARERRHRI SDRFKILQSM  60
VPGGSKMDTV SMLEGAIHYV KFLKTQIWLH QALINFVDFD HDDEPPVYLP AEYNFPHQHS  120
FSLQQNHPSV SVHSHQLSLP QPPLAQCCFQ GEEDFDATMK YWPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0221s00080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140229.14e-88hypothetical protein PHAVU_008G095100g
SwissprotQ9M0412e-30BH140_ARATH; Transcription factor bHLH140
TrEMBLA0A0L9TAN05e-97A0A0L9TAN0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RU105e-97A0A0S3RU10_PHAAN; Uncharacterized protein
STRINGXP_007140229.11e-87(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.12e-31APRATAXIN-like
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]