PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0221s00010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 561aa    MW: 62417.9 Da    PI: 4.5432
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0221s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1211.5e-371905593374
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        +lL +  ea+++g+++la+ +L  ls+ asp g++++Rl++y+ + + ++           l+ ++ +     +  aal+++++  P+ k++
  Vradi0221s00010.1 190 HLLEAHGEALEQGQKSLAEVILRCLSQKASPLGESLERLVFYLSQSMTNHGDY--------LKGEAFK-----NYEAALRALYQGLPVGKVA 268
                        67777889**********************************99999887665........5555554.....45568899*********** PP

               GRAS  95 hltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.........skeeleetgerLakfAeelgvpf 176
                        h++a +aIlea+ ++ + vHi+D  +++G+QW+++++a+a  +    ++++T ++    g         s  + eet+++L + A+++g+++
  Vradi0221s00010.1 269 HFAAVSAILEAMPQDcNSVHIVDSCVGHGFQWVPMIEAIAHMN---KTVKLTSIKWDGDGdgeglecfsSPSNFEETKRQLCEHAKSCGLKL 357
                        ************9888************************965...46999999986665788899999999******************** PP

               GRAS 177 efnvlvakrledl..eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvksl.....sPkvvvvveqeadh...nsesFler 256
                        + +    k +++l  e+++++ +   gE la n+++ l ++ +es   +    e+L++  +l     +  ++++ +  a     n+ +F   
  Vradi0221s00010.1 358 KVEE---KGVKELvaEIKKMNRRGgrGEFLAFNSMIGLPHMGRESSRKQA--LEFLRVAEGLintsgNRGIITFGDGSAYErvkNNLNFSSF 444
                        9987...4455541245555444477***************966655555..99**999988544445569***9987432246999***** PP

               GRAS 257 flealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s 346
                        f   le+y al++++e+ +p+   e+ri +E+ +l++ i+++   ++ e ++    le       e  Fk  +ls+++ ++++ +l   + s
  Vradi0221s00010.1 445 FKAHLEHYQALLEAIESHFPTRFsEARIAMEQLFLQPCISSLDWLQTWEETHSDDPLE------AEISFKGRQLSKNILMEIRQVLGGSEgS 530
                        ******************998755****************999999888444444333......5789*********************966 PP

               GRAS 347 dgyrve.eesgslvlgWkdrpLvsvSaWr 374
                           r+e +++++lvl  k+ +L+ +S W+
  Vradi0221s00010.1 531 YQARIEgQNENELVLEYKGTQLLRFSTWK 559
                        66778878899*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.457162537IPR005202Transcription factor GRAS
PfamPF035145.0E-35190559IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MQQEDMQSPW SFFEGMNSTF ESGVESLSFT VYDHVGDCGS YGFTVGDCGA YGFTVDDHVG  60
DCGLNTLLST LEDSTSEICS IPFSSSSLIF SNDHVHTQYP INEETLQLPS LMEFDDFDSI  120
LDTEIASIQG HGYLWESEGS FFPPQNLSSE VENAWSPTPS VRSELSINQA SPLTLPQQNM  180
EIENQVSLPH LLEAHGEALE QGQKSLAEVI LRCLSQKASP LGESLERLVF YLSQSMTNHG  240
DYLKGEAFKN YEAALRALYQ GLPVGKVAHF AAVSAILEAM PQDCNSVHIV DSCVGHGFQW  300
VPMIEAIAHM NKTVKLTSIK WDGDGDGEGL ECFSSPSNFE ETKRQLCEHA KSCGLKLKVE  360
EKGVKELVAE IKKMNRRGGR GEFLAFNSMI GLPHMGRESS RKQALEFLRV AEGLINTSGN  420
RGIITFGDGS AYERVKNNLN FSSFFKAHLE HYQALLEAIE SHFPTRFSEA RIAMEQLFLQ  480
PCISSLDWLQ TWEETHSDDP LEAEISFKGR QLSKNILMEI RQVLGGSEGS YQARIEGQNE  540
NELVLEYKGT QLLRFSTWKN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0221s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490659.10.0scarecrow-like protein 4
TrEMBLA0A1S3TA700.0A0A1S3TA70_VIGRR; scarecrow-like protein 4
STRINGXP_007140222.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-12GRAS family protein