PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0201s00170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 157aa MW: 18054 Da PI: 4.732 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 58 | 3.4e-18 | 16 | 82 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++yfF+k ++nr+t++g Wk+ g +++++s+ +++vg+kk Lvf+ g+ap+ ++t+Wvm+ey++ Vradi0201s00170.1 16 SGNQYYFFTKV--------NENRTTENGCWKEIGVTEPIFSTFDKKVGTKKYLVFHIGEAPHVTETNWVMQEYHI 82 45667777765........5689*******************99*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 24.638 | 1 | 116 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.05E-22 | 10 | 115 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-11 | 20 | 82 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MEDASFNLPP GKALLSGNQY YFFTKVNENR TTENGCWKEI GVTEPIFSTF DKKVGTKKYL 60 VFHIGEAPHV TETNWVMQEY HICSSGFDTA SYGSSRRRRK HDQSWSQWVL CRVYEKMRSE 120 GVNCYSDDDD SGSELSWLDE VYLSLDDDLE KFGMPN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-18 | 10 | 119 | 63 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-18 | 10 | 119 | 63 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-18 | 10 | 119 | 63 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-18 | 10 | 119 | 63 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-18 | 10 | 119 | 66 | 171 | NAC domain-containing protein 19 |
3swm_B | 9e-18 | 10 | 119 | 66 | 171 | NAC domain-containing protein 19 |
3swm_C | 9e-18 | 10 | 119 | 66 | 171 | NAC domain-containing protein 19 |
3swm_D | 9e-18 | 10 | 119 | 66 | 171 | NAC domain-containing protein 19 |
3swp_A | 9e-18 | 10 | 119 | 66 | 171 | NAC domain-containing protein 19 |
3swp_B | 9e-18 | 10 | 119 | 66 | 171 | NAC domain-containing protein 19 |
3swp_C | 9e-18 | 10 | 119 | 66 | 171 | NAC domain-containing protein 19 |
3swp_D | 9e-18 | 10 | 119 | 66 | 171 | NAC domain-containing protein 19 |
4dul_A | 8e-18 | 10 | 119 | 63 | 168 | NAC domain-containing protein 19 |
4dul_B | 8e-18 | 10 | 119 | 63 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0201s00170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031209 | 1e-148 | KT031209.1 Glycine max clone HN_CCL_4 NAC transcription factor (Glyma04g38990.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014492266.1 | 1e-106 | NAC domain-containing protein 104 | ||||
TrEMBL | A0A1S3TET6 | 1e-105 | A0A1S3TET6_VIGRR; NAC domain-containing protein 104 | ||||
STRING | XP_007137797.1 | 2e-86 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 4e-34 | xylem NAC domain 1 |