PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g14160.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 762aa    MW: 84808.9 Da    PI: 4.7031
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g14160.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-05144166223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      kC +C++ F ++ n++rHir+ H
  Vradi01g14160.1 144 KCDKCSREFCSPINYRRHIRVdH 166
                      7*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.221143171IPR007087Zinc finger, C2H2
PROSITE patternPS000280145166IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MTLVATGGAR GVLARGSRWS GSLKRRLMEE RESFSLTREE KKGKGGPDAM STMPLTVNSS  60
GNDALDRDSQ IVKSLILIKF PLAKLKASSS ADVMNTEEKD TTGGESSLHF PTPDGNSDHL  120
LHLLYALDSQ GWPLLSPMDI QLQKCDKCSR EFCSPINYRR HIRVDHRKKS PDKDFTKNRD  180
LLEAYWDKLS AEEANEVVSL ENVVLEEVPG SSILKSLKTV VLNQRFYSFP PHYLMAGTVL  240
LDILQSKPSN FPISSQVLFN VLDEASEKTC LCGTVESVHK YVFVGDAGKN GLELKNIIAF  300
TSFLLEQKLV KAWLTDKEAE ALRCQKQLVE EEEAAQKRQA EISERKRQKK LRQKQQKARE  360
QRQKAEAEIN GYIESAVKAL SLTEASLDTQ NVEAHNPNAF SDNVASPVPP QYVDTNKEIN  420
EDTRSEYDTI VDQHLERLSE ADDLHTDQIS PLPNLEVNQK HESNHDNKAS AIVSGSEVWS  480
PQYIDTNKEI NEDSRPEYDT IADQNLERWS EADDLHTDQI SPLPNLEVNQ KHEANHDNKA  540
SAIVSGSEVW SPKSEADDLH TDQISPLPNL EVNQKHEANH DSKAEASAIV SGSEVRSPKS  600
EEEIDKVVLK TTQEIKPDQP KNQLLIGSIS VNIDNFKQSE GNMVASQKDS IVENVGKENS  660
SWDKPVNTDP VSQHETEDQV PVQSDETEVS MGSTDGRADI RRFQAFIQEA KAFLARRWEE  720
ALASDHVVLH ISSDSDSSSS QETEDSIADT KLPATSGANP D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343350ERKRQKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g14160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506221.10.0uncharacterized protein LOC106765971 isoform X1
TrEMBLA0A1S3UJL30.0A0A1S3UJL3_VIGRR; uncharacterized protein LOC106765971 isoform X1
STRINGXP_007152241.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45172739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-73C2H2-like zinc finger protein