PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g11850.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 191aa    MW: 20352.5 Da    PI: 6.6873
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g11850.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-1987134556
              AP2   5 GVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                      GVr+++ +g+W+AeIrdp     +  +r++lg+f+t+e Aa+a+++a+++++g+
  Vradi01g11850.1  87 GVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTEEAAARAYDEAALRFRGN 134
                      9*****.**********7.....337*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.68384141IPR001471AP2/ERF domain
PRINTSPR003675.1E-98596IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-3187142IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2187143IPR016177DNA-binding domain
SMARTSM003802.5E-3387147IPR001471AP2/ERF domain
CDDcd000183.16E-1987143No hitNo description
PfamPF008471.3E-1387133IPR001471AP2/ERF domain
PRINTSPR003675.1E-9107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSLLTVAYQR GSGEFIRFTA DDGGEGEYGH GHGDGSGGSP GFNFNQGMQQ QGEVTMQGGS  60
LVSGYNRGDP ELRQMVSALT HVVSSGGVRQ RPWGKWAAEI RDPHKAARVW LGTFDTEEAA  120
ARAYDEAALR FRGNRAKLNF PENVRAVPPL QPFHPATRLT PLESLPPAGG RPEIPPSTWS  180
DTGGQPPPSG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2187144866ATERF1
3gcc_A6e-2187144866ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g11850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-118AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014509135.12e-35ethylene-responsive transcription factor ABR1-like isoform X1
TrEMBLA0A1S3USY85e-34A0A1S3USY8_VIGRR; ethylene-responsive transcription factor ABR1-like isoform X1
STRINGXP_007151985.14e-33(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4072422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-26ethylene response factor 110